RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA674048" and tax_phylum = "Evosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Evosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA674048 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1165803 1165803 PRJNA674048_P_NODE_1101_length_1113_cov_2.779135_g1000_i0 PRJNA674048 1101 1113 2.779135 30.93177255 Entamoeba 5758 Evosea other_Eukaryota 774 0   NTclustered gi|511083902|dbj|AK419160.1| 5759 g1000 i0 80.151 95.48158131177 1063 189 95 20 1 1052 1080 29 Entamoeba histolytica cDNA clone: Xeh-003B20, actin, complete cds, strain: HM-1:IMSS blastn 106271 774 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
3193922 3193922 PRJNA674048_P_NODE_13463_length_247_cov_1.000000_g13260_i0 PRJNA674048 13463 247 1 2.47 Entamoeba dispar 46681 Evosea other_Eukaryota 75 4.76e-9   NTclustered gi|167384666|ref|XM_001736995.1| 370354 g13260 i0 92.308 13.0364372469636 52 4 21 0 7 58 157 106 Entamoeba dispar SAW760 protein disulfide isomerase, putative (EDI_271830), partial mRNA blastn 3220 75 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba dispar
13397122 13397122 PRJNA674048_P_NODE_10371_length_291_cov_3.388430_g10168_i0 PRJNA674048 10371 291 3.38843 9.8603313 Polyschismium peyerimhoffii 2911783 Evosea other_Eukaryota 80.5 1.24e-10   NTclustered gi|2161226355|gb|MZ313553.1| 2911783 g10168 i0 81.553 0.353951890034364 103 13 34 6 160 259 3623 3722 Polyschismium peyerimhoffii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 103 80.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Polyschismium Polyschismium peyerimhoffii
21045583 21045583 PRJNA674048_P_NODE_13137_length_251_cov_1.415842_g12934_i0 PRJNA674048 13137 251 1.415842 3.55376342 Dictyostelium purpureum 5786 Evosea other_Eukaryota 122 1.7099999999999998e-23   NTclustered gi|330840296|ref|XM_003292106.1| 5786 g12934 i0 83.721 0.51394422310757 129 21 51 0 123 251 2018 1890 Dictyostelium purpureum major vault protein-alpha (DICPUDRAFT_50257), partial mRNA blastn 129 122 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;