RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA674048" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA674048 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4471147 4471147 PRJNA674048_P_NODE_5704_length_430_cov_18.005249_g5501_i0 PRJNA674048 5704 430 18.005249 77.4225707 Vannella croatica 1778588 Discosea other_Eukaryota 599 1.1799999999999997e-166   NTclustered gi|973761167|gb|KT345693.1| 1778588 g5501 i0 91.841 89.7953488372093 429 35 99 0 1 429 545 973 Vannella croatica isolate KRKA 29.9.7.6.1 small subunit ribosomal RNA gene, partial sequence blastn 38612 599 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella croatica
9571707 9571707 PRJNA674048_P_NODE_33468_length_157_cov_4.185185_g33265_i0 PRJNA674048 33468 157 4.185185 6.57074045 Vannella sp. ACN1 1215628 Discosea other_Eukaryota 279 5.46e-71   NTclustered gi|399764213|gb|JQ271724.1| 1215628 g33265 i0 98.726 35.9872611464968 157 2 100 0 1 157 140 296 Vannella sp. ACN1 18S ribosomal RNA gene, partial sequence blastn 5650 279 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. ACN1
10847100 10847100 PRJNA674048_P_NODE_11189_length_278_cov_2.026201_g10986_i0 PRJNA674048 11189 278 2.026201 5.63283878 Vannella miroides 218656 Discosea other_Eukaryota 442 1.2999999999999995e-119   NTclustered gi|27803574|gb|AY183888.1| 218656 g10986 i0 95.324 93.7661870503597 278 13 100 0 1 278 1929 1652 Vannella miroides small subunit ribosomal RNA gene, complete sequence blastn 26067 442 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella miroides
12122380 12122380 PRJNA674048_P_NODE_20550_length_194_cov_1.793103_g20347_i0 PRJNA674048 20550 194 1.793103 3.47861982 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 235 1.55e-57   NTclustered gi|470398688|ref|XM_004335296.1| 1257118 g20347 i0 89.305 199.824742268041 187 20 96 0 8 194 1 187 Acanthamoeba castellanii str. Neff polyubiquitin, putative (ACA1_239270), partial mRNA blastn 38766 235 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;