RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA674048" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA674048 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1919210 1919210 PRJNA674048_P_NODE_17922_length_209_cov_2.287500_g17719_i0 PRJNA674048 17922 209 2.2875 4.780875 Chytriomycetaceae sp. 2012318 Fungi Fungi 52.8 0.018   NTclustered gi|2468791082|gb|OQ702938.1| 2012318 g17719 i0 100 0.133971291866029 28 0 13 0 39 66 4562 4589 Chytriomycetaceae sp. isolate PSC286 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 28 52.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae   Chytriomycetaceae sp.
2441574 2441574 PRJNA674048_P_NODE_8782_length_323_cov_27.897810_g8579_i0 PRJNA674048 8782 323 27.89781 90.1099263 Opisthokonta 33154 Fungi Fungi 134 1.05e-26   NTclustered gi|612507318|gb|KF586842.1| 1486924 g8579 i0 89.216 11.2445820433437 102 11 32 0 15 116 6230 6129 Gromochytrium mamkaevae strain CALU x-51 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 3632 134 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Gromochytriales Gromochytriaceae Gromochytrium Gromochytrium mamkaevae
15945769 15945769 PRJNA674048_P_NODE_21773_length_188_cov_4.661871_g21570_i0 PRJNA674048 21773 188 4.661871 8.76431748 Lacustromyces hiemalis 110070 Fungi Fungi 195 2.53e-45   NTclustered gi|386165080|gb|HQ901700.1| 110070 g21570 i0 92.647 83.7872340425532 136 9 72 1 52 187 136 2 Lacustromyces hiemalis voucher JEL31 28S large subunit ribosomal RNA gene, partial sequence blastn 15752 195 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Lacustromyces Lacustromyces hiemalis
15945797 15945797 PRJNA674048_P_NODE_25393_length_174_cov_1.664000_g25190_i0 PRJNA674048 25393 174 1.664 2.89536 Spizellomyces punctatus 109760 Fungi Fungi 106 1.11e-18   NTclustered gi|1026970659|ref|XM_016751545.1| 645134 g25190 i0 85.047 3.79310344827586 107 12 60 4 70 174 829 725 Spizellomyces punctatus DAOM BR117 40S ribosomal protein S13 (SPPG_03270), mRNA blastn 660 106 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
17221059 17221059 PRJNA674048_P_NODE_11414_length_275_cov_1.314159_g11211_i0 PRJNA674048 11414 275 1.314159 3.61393725 Polychytrium aggregatum 110093 Fungi Fungi 189 1.8499999999999993e-43   NTclustered gi|2432150000|ref|XM_053114178.1| 110093 g11211 i0 79.775 73.2509090909091 267 48 96 6 10 273 294 557 Polychytrium aggregatum ribosomal protein S2, flavodoxin-like domain-containing protein (BJ171DRAFT_582387), partial mRNA blastn 20144 189 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;