RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA674048" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA674048 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1165790 1165790 PRJNA674048_P_NODE_10021_length_298_cov_2.056225_g9818_i0 PRJNA674048 10021 298 2.056225 6.1275505 Pseudomonadati 3379134 Bacteria Bacteria 551 2.239999999999999e-152   NTclustered gi|1226876681|gb|CP022559.1| 197 g9818 i0 100 100 298 0 100 0 1 298 701412 701115 Campylobacter jejuni strain 11168H/araE chromosome, complete genome blastn 29800 551 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
2441177 2441177 PRJNA674048_P_NODE_13222_length_250_cov_1.293532_g13019_i0 PRJNA674048 13222 250 1.293532 3.23383 Pseudomonadati 3379134 Bacteria Bacteria 462 8.83e-126   NTclustered gi|1226876681|gb|CP022559.1| 197 g13019 i0 100 100 250 0 100 0 1 250 701680 701929 Campylobacter jejuni strain 11168H/araE chromosome, complete genome blastn 25000 462 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
10094601 10094601 PRJNA674048_P_NODE_19948_length_197_cov_2.459459_g19745_i0 PRJNA674048 19948 197 2.459459 4.84513423 Pseudomonadati 3379134 Bacteria Bacteria 364 1.929999999999999e-96   NTclustered gi|1226876681|gb|CP022559.1| 197 g19745 i0 100 100 197 0 100 0 1 197 701650 701454 Campylobacter jejuni strain 11168H/araE chromosome, complete genome blastn 19700 364 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
20292513 20292513 PRJNA674048_P_NODE_28536_length_167_cov_0.881356_g28333_i0 PRJNA674048 28536 167 0.881356 1.47186452 Campylobacter 194 Bacteria Bacteria 56.5 0.001   NTclustered gi|2198377002|gb|CP059597.1| 1032242 g28333 i0 100 1.25748502994012 30 0 18 0 61 90 1296681 1296710 Campylobacter molothri strain RM10537 chromosome, complete genome blastn 210 56.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter molothri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;