RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA674048" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA674048 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6270001 6270001 PRJNA674048_P_NODE_29445_length_166_cov_0.888889_g29242_i0 PRJNA674048 29445 166 0.888889 1.47555574 Halalkalicoccus 332246 Archaea Archaea 292 7.52e-75   NTclustered gi|507148368|ref|NR_103171.1| 413810 g29242 i0 98.78 178.030120481928 164 2 99 0 3 166 1262 1099 Halalkalicoccus jeotgali strain B3 23S ribosomal RNA gene, complete sequence blastn 29553 292 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halalkalicoccus Halalkalicoccus jeotgali
6270036 6270036 PRJNA674048_P_NODE_31645_length_163_cov_0.912281_g31442_i0 PRJNA674048 31645 163 0.912281 1.48701803 Haloarcula 2237 Archaea Archaea 132 1.7e-26   NTclustered gi|343781660|gb|CP002921.1| 634497 g31442 i0 84.733 5.77914110429448 131 20 80 0 30 160 2336111 2336241 Haloarcula hispanica ATCC 33960 chromosome I, complete sequence blastn 942 132 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula Haloarcula hispanica
22843268 22843268 PRJNA674048_P_NODE_10418_length_291_cov_0.979339_g10215_i0 PRJNA674048 10418 291 0.979339 2.84987649 Halalkalicoccus 332246 Archaea Archaea 483 8.069999999999998e-132   NTclustered gi|507148368|ref|NR_103171.1| 413810 g10215 i0 96.564 77.7938144329897 291 10 100 0 1 291 383 93 Halalkalicoccus jeotgali strain B3 23S ribosomal RNA gene, complete sequence blastn 22638 483 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halalkalicoccus Halalkalicoccus jeotgali

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;