RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA674048" and tax_clade = "Cyanobacteriota/Melainabacteria group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Cyanobacteriota/Melainabacteria group · 5 ✖

bioproject 1

  • PRJNA674048 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
642987 642987 PRJNA674048_P_NODE_18941_length_203_cov_1.805195_g18738_i0 PRJNA674048 18941 203 1.805195 3.66454585 unicellular cyanobacterium A47 3083250 Bacteria Bacteria 329 7.3e-86   NTclustered gi|2599449524|gb|OR727807.1| 3083250 g18738 i0 96.5 95.5024630541872 200 3 97 4 1 196 19 218 Unicellular cyanobacterium A47 16S ribosomal RNA gene, partial sequence blastn 19387 329 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota         unicellular cyanobacterium A47
5746597 5746597 PRJNA674048_P_NODE_26325_length_171_cov_1.278689_g26122_i0 PRJNA674048 26325 171 1.278689 2.18655819 Cyanobacterium stanieri 102235 Bacteria Bacteria 316 4.6e-82   NTclustered gi|428686127|gb|CP003940.1| 292563 g26122 i0 100 173.350877192982 171 0 100 0 1 171 1170437 1170267 Cyanobacterium stanieri PCC 7202, complete genome blastn 29643 316 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcales Geminocystaceae Cyanobacterium Cyanobacterium stanieri
17221111 17221111 PRJNA674048_P_NODE_20254_length_196_cov_1.265306_g20051_i0 PRJNA674048 20254 196 1.265306 2.47999976 Cyanobacterium stanieri 102235 Bacteria Bacteria 340 3.229999999999999e-89   NTclustered gi|428686127|gb|CP003940.1| 292563 g20051 i0 97.959 133.081632653061 196 4 100 0 1 196 3143965 3143770 Cyanobacterium stanieri PCC 7202, complete genome blastn 26084 340 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcales Geminocystaceae Cyanobacterium Cyanobacterium stanieri
18495462 18495462 PRJNA674048_P_NODE_23575_length_181_cov_1.575758_g23372_i0 PRJNA674048 23575 181 1.575758 2.85212198 Spirirestis rafaelensis 293980 Bacteria Bacteria 281 1.8e-71   NTclustered gi|1358126427|gb|KY963625.1| 119528 g23372 i0 94.565 253.618784530387 184 7 100 2 1 181 251 434 Spirirestis rafaelensis SRS70 strain UTEX B 2660 23S ribosomal RNA gene, partial sequence blastn 45905 281 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Nostocales Tolypothrichaceae Spirirestis Spirirestis rafaelensis
25392350 25392350 PRJNA674048_P_NODE_17240_length_214_cov_1.260606_g17037_i0 PRJNA674048 17240 214 1.260606 2.69769684 root 1 Root_unresolved Root_unresolved 344 2.78e-90   NTclustered gi|63022551|gb|DQ004310.1| 1211 g17037 i0 100 188.995327102804 186 0 100 0 1 186 40 225 Uncultured cyanobacterium clone PEN12 16S ribosomal RNA gene, partial sequence blastn 40445 346 0.994219653179191 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota         uncultured cyanobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;