RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA674048" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA674048 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4471139 4471139 PRJNA674048_P_NODE_33284_length_159_cov_2.836364_g33081_i0 PRJNA674048 33284 159 2.836364 4.50981876 Candidatus Gracilibacteria bacterium 28_42_T64 1862133 Bacteria Bacteria 141 2.73e-29   NTclustered gi|1769783243|gb|CP042461.1| 1862133 g33081 i0 83.333 8.12578616352201 156 22 97 4 1 154 1250849 1250696 Candidatus Gracilibacteria bacterium 28_42_T64 chromosome, complete genome blastn 1292 141 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium 28_42_T64
8296398 8296398 PRJNA674048_P_NODE_22827_length_184_cov_1.488889_g22624_i0 PRJNA674048 22827 184 1.488889 2.73955576 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 291 3.05e-74   NTclustered gi|1950821269|gb|CP066696.1| 2026720 g22624 i0 95.109 62.9782608695652 184 9 100 0 1 184 799594 799777 Candidatus Saccharibacteria bacterium isolate NC_groundwater_1927_Pr3_S-0.2um_48_6 chromosome blastn 11588 291 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
19769901 19769901 PRJNA674048_P_NODE_14216_length_239_cov_1.078947_g14013_i0 PRJNA674048 14216 239 1.078947 2.57868333 uncultured Candidatus Binatia bacterium 3036252 Bacteria Bacteria 254 5.49e-63   NTclustered gi|2891481979|emb|OZ219754.1| 3036252 g14013 i0 85.83 160.933054393305 247 26 100 5 1 239 2069196 2069441 MAG: uncultured Candidatus Binatia bacterium isolate 58a26a4a-5c73-4e1d-804e-87f8126ae6b7 genome assembly, chromosome: 1 blastn 38463 254 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia       uncultured Candidatus Binatia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;