RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA674048" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 2 ✖

bioproject 1

  • PRJNA674048 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1919329 1919329 PRJNA674048_P_NODE_31882_length_163_cov_0.912281_g31679_i0 PRJNA674048 31882 163 0.912281 1.48701803 Thecamonas trahens 529818 Root_unresolved Root_unresolved 169 1.29e-37   NTclustered gi|923125359|ref|XM_013900694.1| 461836 g31679 i0 85.366 84.0613496932515 164 22 100 2 1 163 254 92 Thecamonas trahens ATCC 50062 calmodulin (AMSG_07687), mRNA blastn 13702 169 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
9571561 9571561 PRJNA674048_P_NODE_16268_length_221_cov_1.197674_g16065_i0 PRJNA674048 16268 221 1.197674 2.64685954 Thecamonas trahens 529818 Root_unresolved Root_unresolved 141 4.06e-29   NTclustered gi|923137764|ref|XM_013906893.1| 461836 g16065 i0 82.143 0.760180995475113 168 26 75 4 56 221 7 172 Thecamonas trahens ATCC 50062 40S ribosomal protein SA (AMSG_00611), partial mRNA blastn 168 141 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;