RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA672101" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA672101 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
641783 641783 PRJNA672101_S_NODE_17101_length_299_cov_4.053097_g17070_i0 PRJNA672101 17101 299 4.053097 12.11876003 Littorina saxatilis 31220 Mollusca Mollusca 52.8 0.028   NTclustered gi|2868691237|ref|XM_070349129.1| 31220 g17070 i0 100 0.468227424749164 28 0 9 0 1 28 604 577 PREDICTED: Littorina saxatilis uncharacterized protein (LOC138976286), mRNA blastn 140 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Littorinimorpha Littorinidae Littorina Littorina saxatilis
12120985 12120985 PRJNA672101_S_NODE_13630_length_321_cov_1.435484_g13599_i0 PRJNA672101 13630 321 1.435484 4.60790364 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.03   NTclustered gi|2912990805|dbj|AP039595.1| 145626 g13599 i0 92.105 0.118380062305296 38 2 12 1 174 211 8954359 8954323 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 14, sequence blastn 38 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
19768646 19768646 PRJNA672101_S_NODE_15936_length_306_cov_2.064378_g15905_i0 PRJNA672101 15936 306 2.064378 6.31699668 Bradybaena similaris 145626 Mollusca Mollusca 54.7 0.008   NTclustered gi|2913000417|dbj|AP039607.1| 145626 g15905 i0 96.875 0.209150326797386 32 1 10 0 216 247 8068705 8068736 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 26, sequence blastn 64 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;