RNAquarium Metadata Server
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contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA672101" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 12 ✖

tax_kingdom 1

bioproject 1

  • PRJNA672101 · 12 ✖

analysis 1

  • blastn · 12 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
641927 641927 PRJNA672101_S_NODE_27001_length_256_cov_2.524590_g26970_i0 PRJNA672101 27001 256 2.52459 6.4629504 Rothia nasimurium 85336 Bacteria Bacteria 326 1.2399999999999999e-84   NTclustered gi|1890911746|gb|CP056080.1| 85336 g26970 i0 92.174 267.8125 230 18 90 0 6 235 1714374 1714603 Rothia nasimurium strain E1706032 chromosome, complete genome blastn 68560 326 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia nasimurium
7020691 7020691 PRJNA672101_S_NODE_35226_length_210_cov_4.291971_g35195_i0 PRJNA672101 35226 210 4.291971 9.0131391 Streptomyces uncialis 1048205 Bacteria Bacteria 65.8 2.37e-6   NTclustered gi|2655924843|gb|CP109290.1| 1048205 g35195 i0 90.385 0.49047619047619 52 2 24 3 3 52 5130118 5130168 Streptomyces uncialis strain NBC 01624 chromosome, complete genome blastn 103 65.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces uncialis
7543388 7543388 PRJNA672101_S_NODE_7106_length_377_cov_3.753289_g7075_i0 PRJNA672101 7106 377 3.753289 14.14989953 Cutibacterium 1912216 Bacteria Bacteria 697 0   NTclustered gi|1446500593|gb|CP031442.1| 1747 g7075 i0 100 269.623342175066 377 0 100 0 1 377 56706 57082 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 101648 697 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
10845963 10845963 PRJNA672101_S_NODE_229_length_856_cov_30.168582_g211_i0 PRJNA672101 229 856 30.168582 258.24306192 Brevibacterium casei 33889 Bacteria Bacteria 1581 0   NTclustered gi|1958263390|gb|CP068173.1| 33889 g211 i0 100 296.420560747664 856 0 100 0 1 856 173304 172449 Brevibacterium casei strain FDAARGOS_1100 chromosome, complete genome blastn 253736 1581 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium casei
14670805 14670805 PRJNA672101_S_NODE_15112_length_311_cov_3.134454_g15081_i0 PRJNA672101 15112 311 3.134454 9.74815194 Actinomyces viscosus 1656 Bacteria Bacteria 490 5.1999999999999985e-134   NTclustered gi|1540150178|emb|LR134477.1| 1656 g15081 i0 95.208 262.392282958199 313 10 99 4 1 309 245454 245143 Actinomyces viscosus strain NCTC10951 genome assembly, chromosome: 1 blastn 81604 490 1 Bacteria   Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces viscosus
15194088 15194088 PRJNA672101_S_NODE_12812_length_326_cov_4.000000_g12781_i0 PRJNA672101 12812 326 4 13.04 Propionibacteriaceae 31957 Bacteria Bacteria 558 1.48e-154   NTclustered gi|2016305036|gb|CP071870.1| 2760308 g12781 i0 97.546 229.003067484663 326 8 100 0 1 326 2050501 2050826 Propioniciclava sp. MC1595 chromosome, complete genome blastn 74655 558 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Propioniciclava Propioniciclava sp. MC1595
15194101 15194101 PRJNA672101_S_NODE_27552_length_254_cov_2.475138_g27521_i0 PRJNA672101 27552 254 2.475138 6.28685052 Actinomycetes 1760 Bacteria Bacteria 464 2.4999999999999994e-126   NTclustered gi|1828205916|gb|MT279343.1| 51513 g27521 i0 99.606 100.007874015748 254 1 100 0 1 254 450 197 Agromyces sp. strain LA10 16S ribosomal RNA gene, partial sequence blastn 25402 464 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Agromyces Agromyces sp.
16468409 16468409 PRJNA672101_S_NODE_21053_length_280_cov_6.951691_g21022_i0 PRJNA672101 21053 280 6.951691 19.4647348 root 1 Root_unresolved Root_unresolved 518 2.12e-142   NTclustered gi|1313740129|dbj|LC341276.1| 1747 g21022 i0 100 103 280 0 100 0 1 280 1039 1318 Cutibacterium acnes JK12.2 gene for 16S ribosomal RNA, partial sequence blastn 28840 518 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
19017237 19017237 PRJNA672101_S_NODE_33115_length_241_cov_3.482143_g33084_i0 PRJNA672101 33115 241 3.482143 8.39196463 Cutibacterium 1912216 Bacteria Bacteria 446 8.519999999999999e-121   NTclustered gi|1446500593|gb|CP031442.1| 1747 g33084 i0 100 59.4647302904564 241 0 100 0 1 241 88110 88350 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 14331 446 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
22319457 22319457 PRJNA672101_S_NODE_8858_length_358_cov_6.150877_g8827_i0 PRJNA672101 8858 358 6.150877 22.02013966 uncultured Frankia sp. 181582 Bacteria Bacteria 412 1.35e-110   NTclustered gi|48728172|gb|AY627744.1| 181582 g8827 i0 87.465 155.220670391061 359 43 100 2 1 358 530 887 Uncultured Frankia sp. clone CEIN1811 16S-23S intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 55569 412 1 Bacteria   Bacillati Actinomycetota Actinomycetes Frankiales Frankiaceae Frankia uncultured Frankia sp.
24867935 24867935 PRJNA672101_S_NODE_11440_length_336_cov_7.543726_g11409_i0 PRJNA672101 11440 336 7.543726 25.34691936 Pedococcus dokdonensis 443156 Bacteria Bacteria 527 4.3199999999999985e-145   NTclustered gi|1085742359|emb|LT629711.1| 443156 g11409 i0 94.94 349.488095238095 336 17 100 0 1 336 1368415 1368080 Phycicoccus dokdonensis strain DSM 22329 genome assembly, chromosome: I blastn 117428 527 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Pedococcus Pedococcus dokdonensis
24868063 24868063 PRJNA672101_S_NODE_19360_length_288_cov_3.390698_g19329_i0 PRJNA672101 19360 288 3.390698 9.76521024 Brevibacterium casei 33889 Bacteria Bacteria 532 7.8e-147   NTclustered gi|1943100173|gb|CP065629.1| 33889 g19329 i0 100 16.0381944444444 288 0 100 0 1 288 3028899 3029186 Brevibacterium casei strain FDAARGOS_937 chromosome, complete genome blastn 4619 532 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium casei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;