RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA672101" and tax_kingdom = "Orthornavirae"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 4 ✖

bioproject 1

  • PRJNA672101 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2440808 2440808 PRJNA672101_S_NODE_19982_length_285_cov_5.424528_g19951_i0 PRJNA672101 19982 285 5.424528 15.4599048 Cripavirus 144051 Viruses Viruses 481 2.83e-131   NTclustered gi|1758971469|gb|MK704471.1| 209529 g19951 i0 97.193 63.1333333333333 285 7 100 1 1 285 9516 9799 Aphid lethal paralysis virus isolate ALPV-CE, complete genome blastn 17993 481 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Dicistroviridae Cripavirus Cripavirus mortiferum
10845785 10845785 PRJNA672101_S_NODE_1069_length_586_cov_33.633528_g1041_i0 PRJNA672101 1069 586 33.633528 197.09247408 Dolerus tritici iflavirus 1 3350209 Viruses Viruses 56.5 0.004   NTclustered gi|2833733277|gb|PQ323359.2| 3350209 g1041 i0 96.97 0.10580204778157 33 1 6 0 1 33 56 88 Dolerus tritici iflavirus 1 isolate HN-WS polyprotein gene, complete cds blastn 62 56.5 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Iflaviridae Iflavirus Dolerus tritici iflavirus 1
11369033 11369033 PRJNA672101_S_NODE_21129_length_280_cov_2.231884_g21098_i0 PRJNA672101 21129 280 2.231884 6.2492752 Orthorubulavirus 2560195 Viruses Viruses 512 9.85e-141   NTclustered gi|1806608684|gb|MN604146.1| 2560580 g21098 i0 99.643 70.275 280 1 100 0 1 280 987 708 Mammalian orthorubulavirus 5 isolate XJ033, complete genome blastn 19677 512 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Orthorubulavirus Orthorubulavirus mammalis
19768821 19768821 PRJNA672101_S_NODE_28376_length_251_cov_1.983146_g28345_i0 PRJNA672101 28376 251 1.983146 4.97769646 Porcine bastrovirus 2588662 Viruses Viruses 56.5 0.002   NTclustered gi|1682068313|gb|MK387176.1| 2588662 g28345 i0 96.97 0.247011952191235 33 1 13 0 1 33 13 45 Porcine bastrovirus isolate PBastV_USA 2017-1, complete genome blastn 62 56.5 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Stellavirales Astroviridae   Porcine bastrovirus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;