RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA672101" and tax_clade = "Sar"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA672101 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1917985 1917985 PRJNA672101_S_NODE_16742_length_301_cov_4.407895_g16711_i0 PRJNA672101 16742 301 4.407895 13.26776395 Phytophthora cactorum 29920 SAR_Eukaryotes SAR_Eukaryotes 69.4 2.78e-7   NTclustered gi|2308292329|gb|OK574294.1| 29920 g16711 i0 83.117 1.49833887043189 77 11 25 2 61 135 24581 24505 Phytophthora cactorum voucher CH98LOQ1 mitochondrion, complete genome blastn 451 69.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cactorum
5745285 5745285 PRJNA672101_S_NODE_16245_length_304_cov_3.463203_g16214_i0 PRJNA672101 16245 304 3.463203 10.52813712 Guinardia delicatula 1244696 SAR_Eukaryotes SAR_Eukaryotes 145 4.54e-30   NTclustered gi|2074156200|gb|MW413905.1| 216802 g16214 i0 79.439 43.4703947368421 214 36 69 6 77 285 24392 24602 Guinardia delicatula mitochondrion, complete genome blastn 13215 145 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Rhizosoleniales Rhizosoleniaceae Guinardia Guinardia delicatula
6269376 6269376 PRJNA672101_S_NODE_205_length_875_cov_6.735661_g188_i0 PRJNA672101 205 875 6.735661 58.93703375 Pseudo-nitzschia 41953 SAR_Eukaryotes SAR_Eukaryotes 86.1 8.7e-12   NTclustered gi|2852238308|gb|PQ498360.1| 189737 g188 i0 97.959 4.06514285714286 49 1 6 0 415 463 33790 33838 Pseudo-nitzschia galaxiae isolate CNS01103 mitochondrion, complete genome blastn 3557 86.1 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Pseudo-nitzschia Pseudo-nitzschia galaxiae
19768931 19768931 PRJNA672101_S_NODE_34656_length_227_cov_2.915584_g34625_i0 PRJNA672101 34656 227 2.915584 6.61837568 Stramenopiles sp. MAST-7B-sp1 2805729 SAR_Eukaryotes SAR_Eukaryotes 76.8 1.2e-9   NTclustered gi|1960721541|gb|MW521835.1| 2805729 g34625 i0 94 17.0132158590308 50 3 22 0 178 227 5595 5546 Stramenopiles sp. MAST-7B-sp1 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 3862 76.8 1 Eukaryota Sar             Stramenopiles sp. MAST-7B-sp1

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;