RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA672101" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA672101 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1917907 1917907 PRJNA672101_S_NODE_11362_length_337_cov_2.503788_g11331_i0 PRJNA672101 11362 337 2.503788 8.43776556 Cochliopodium minus 313997 Discosea other_Eukaryota 527 4.3299999999999996e-145   NTclustered gi|330902862|gb|JF298257.1| 313997 g11331 i0 95.015 14.9139465875371 341 7 100 4 1 337 458 124 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 5026 527 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
12121313 12121313 PRJNA672101_S_NODE_4670_length_413_cov_16.314706_g4639_i0 PRJNA672101 4670 413 16.314706 67.37973578 Ptolemeba bulliensis 1525729 Tubulinea other_Eukaryota 309 2.13e-79   NTclustered gi|667752759|gb|KJ542108.1| 1525729 g4639 i0 98.295 24.2130750605327 176 3 43 0 1 176 1736 1911 Ptolemeba bulliensis isolate Sk13-4e 18S ribosomal RNA gene, partial sequence blastn 10000 309 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Ptolemeba Ptolemeba bulliensis
21044582 21044582 PRJNA672101_S_NODE_35017_length_217_cov_6.784722_g34986_i0 PRJNA672101 35017 217 6.784722 14.72284674 Cochliopodium actinophorum 703021 Discosea other_Eukaryota 390 3.579999999999999e-104   NTclustered gi|330902844|gb|JF298248.1| 703021 g34986 i0 99.078 77.036866359447 217 2 100 0 1 217 867 1083 Cochliopodium actinophorum clone 1206 18S ribosomal RNA gene, partial sequence blastn 16717 390 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium actinophorum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;