RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA670521" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA670521 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10093606 10093606 PRJNA670521_P_NODE_71908_length_250_cov_1.774011_g71163_i0 PRJNA670521 71908 250 1.774011 4.4350275 Akkermansia 239934 Bacteria Bacteria 331 2.6e-86   NTclustered gi|2634178342|gb|CP139035.1| 3040764 g71163 i0 92.308 285.42 234 17 94 1 15 248 789850 790082 Akkermansia sp. N21116 chromosome, complete genome blastn 71355 331 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia sp. N21116
14667088 14667088 PRJNA670521_P_NODE_31312_length_355_cov_1.014184_g30567_i0 PRJNA670521 31312 355 1.014184 3.6003532 Opitutales bacterium 2026772 Bacteria Bacteria 241 6.68e-59   NTclustered gi|2626245913|emb|OY829953.1| 2026772 g30567 i0 79.444 86.7492957746479 360 58 99 13 1 350 680583 680230 MAG: Opitutales bacterium isolate cf0dc631-26ae-4be7-9546-4b6096dd6533 genome assembly, chromosome: 1 blastn 30796 241 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales     Opitutales bacterium
21040686 21040686 PRJNA670521_P_NODE_49917_length_296_cov_1.354260_g49172_i0 PRJNA670521 49917 296 1.35426 4.0086096 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 501 2.27e-137   NTclustered gi|2874254020|emb|OY970345.1| 412056 g49172 i0 97.288 126.760135135135 295 8 99 0 2 296 3894724 3895018 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04212.bin.2.122 genome assembly, chromosome: 1 blastn 37521 501 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
22842451 22842451 PRJNA670521_P_NODE_9918_length_568_cov_1.975758_g9186_i0 PRJNA670521 9918 568 1.975758 11.22230544 Verrucomicrobiota 74201 Bacteria Bacteria 486 1.3e-132   NTclustered gi|297180506|gb|GU474845.1| 710995 g9186 i0 83.271 140.75176056338 538 80 94 9 34 568 1169 1699 Uncultured Verrucomicrobiales bacterium HF0010_05E02 genomic sequence blastn 79947 488 0.995901639344262 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     uncultured Verrucomicrobiales bacterium HF0010_05E02
23590866 23590866 PRJNA670521_P_NODE_10079_length_564_cov_1.401222_g9347_i0 PRJNA670521 10079 564 1.401222 7.90289208 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 1009 0   NTclustered gi|2874254020|emb|OY970345.1| 412056 g9347 i0 98.938 251.606382978723 565 5 100 1 1 564 3892248 3892812 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04212.bin.2.122 genome assembly, chromosome: 1 blastn 141906 1009 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;