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contig_metadata

31 rows where analysis = "blastn", bioproject = "PRJNA670521" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 31 ✖

tax_clade 1

bioproject 1

  • PRJNA670521 · 31 ✖

analysis 1

  • blastn · 31 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3189238 3189238 PRJNA670521_P_NODE_76643_length_248_cov_1.011429_g75898_i0 PRJNA670521 76643 248 1.011429 2.50834392 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 132 2.8e-26   NTclustered gi|2795020885|ref|XM_067935683.1| 4785 g75898 i0 82.39 2.58064516129032 159 20 63 8 91 245 67 221 Phytophthora cinnamomi ubiquitin-conjugating enzyme E2 N (IUM83_11140), partial mRNA blastn 640 132 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
4466133 4466133 PRJNA670521_P_NODE_50444_length_295_cov_1.036036_g49699_i0 PRJNA670521 50444 295 1.036036 3.0563062 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 180 1.2e-40   NTclustered gi|166039189|emb|CU355239.1| 100861 g49699 i0 79.323 41.8440677966102 266 47 89 8 9 270 551 290 Aphanomyces euteiches cDNA blastn 12344 180 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
4466144 4466144 PRJNA670521_P_NODE_54624_length_285_cov_1.122642_g53879_i0 PRJNA670521 54624 285 1.122642 3.1995297 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 165 3.2400000000000004e-36   NTclustered gi|675169350|ref|XM_008895312.1| 761204 g53879 i0 77.818 23.7684210526316 275 55 95 6 9 280 328 599 Phytophthora parasitica INRA-310 phosphoenolpyruvate carboxykinase (ATP) mRNA blastn 6774 165 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
5741679 5741679 PRJNA670521_P_NODE_56505_length_281_cov_0.908654_g55760_i0 PRJNA670521 56505 281 0.908654 2.55331774 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 193 1.46e-44   NTclustered gi|669165645|ref|XM_008620163.1| 1156394 g55760 i0 85.106 3.19217081850534 188 28 67 0 6 193 290 103 Saprolegnia diclina VS20 caltractin mRNA blastn 897 193 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
6268848 6268848 PRJNA670521_P_NODE_64505_length_263_cov_1.210526_g63760_i0 PRJNA670521 64505 263 1.210526 3.18368338 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 222 1.73e-53   NTclustered gi|156987045|gb|EU080568.1| 459879 g63760 i0 84.685 8.14448669201521 222 34 84 0 17 238 1285 1506 Phytophthora sp. P10690 heat shock protein 90 (HSP90) gene, partial cds blastn 2142 222 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sp. P10690
7016588 7016588 PRJNA670521_P_NODE_11626_length_528_cov_1.382418_g10891_i0 PRJNA670521 11626 528 1.382418 7.29916704 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 224 1.04e-53   NTclustered gi|669148581|ref|XM_008611631.1| 1156394 g10891 i0 78.297 22.4337121212121 364 67 68 11 15 372 615 258 Saprolegnia diclina VS20 hypothetical protein mRNA blastn 11845 224 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
7016724 7016724 PRJNA670521_P_NODE_46006_length_306_cov_1.321888_g45261_i0 PRJNA670521 46006 306 1.321888 4.04497728 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 278 4.33e-70   NTclustered gi|2795059420|ref|XM_067933361.1| 4785 g45261 i0 83.444 4.90522875816993 302 46 98 4 6 305 681 382 Phytophthora cinnamomi deoxyhypusine synthase (IUM83_08957), partial mRNA blastn 1501 278 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
7016769 7016769 PRJNA670521_P_NODE_55126_length_284_cov_1.094787_g54381_i0 PRJNA670521 55126 284 1.094787 3.10919508 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 191 5.33e-44   NTclustered gi|695428657|ref|XM_009531708.1| 67593 g54381 i0 80.556 56.5528169014084 252 45 88 3 1 250 339 90 Phytophthora sojae hypothetical protein partial mRNA blastn 16061 191 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
8291275 8291275 PRJNA670521_P_NODE_14447_length_483_cov_0.968293_g13706_i0 PRJNA670521 14447 483 0.968293 4.67685519 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 381 5.289999999999999e-101   NTclustered gi|2795049776|ref|XM_067938656.1| 4785 g13706 i0 82.379 84.6438923395445 454 65 92 15 39 483 232 679 Phytophthora cinnamomi polyadenylate-binding protein 1-B (IUM83_13951), partial mRNA blastn 40883 381 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
8291435 8291435 PRJNA670521_P_NODE_56447_length_281_cov_1.110577_g55702_i0 PRJNA670521 56447 281 1.110577 3.12072137 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 99 3.28e-16   NTclustered gi|2795018606|ref|XM_067929517.1| 4785 g55702 i0 88.75 7.48398576512456 80 9 28 0 12 91 609 530 Phytophthora cinnamomi 12-oxophytodienoate reductase 1 (IUM83_05382), partial mRNA blastn 2103 99 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
8817988 8817988 PRJNA670521_P_NODE_80887_length_246_cov_0.942197_g80142_i0 PRJNA670521 80887 246 0.942197 2.31780462 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 121 6.01e-23   NTclustered gi|2795019416|ref|XM_067934261.1| 4785 g80142 i0 87.5 34.0081300813008 104 13 42 0 132 235 217 320 Phytophthora cinnamomi Nucleoside diphosphate kinase B (IUM83_09794), partial mRNA blastn 8366 121 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
9566642 9566642 PRJNA670521_P_NODE_25188_length_385_cov_1.230769_g24444_i0 PRJNA670521 25188 385 1.230769 4.73846065 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 189 2.6799999999999993e-43   NTclustered gi|695386076|ref|XM_009520163.1| 67593 g24444 i0 77.987 21.3272727272727 318 59 82 8 71 384 1266 956 Phytophthora sojae hypothetical protein partial mRNA blastn 8211 189 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
10842574 10842574 PRJNA670521_P_NODE_94209_length_226_cov_2.457516_g93464_i0 PRJNA670521 94209 226 2.457516 5.55398616 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 99 2.55e-16   NTclustered gi|2794923538|ref|XM_067882072.1| 164328 g93464 i0 95.161 26.1017699115044 62 3 27 0 165 226 141 80 Phytophthora ramorum Heat shock protein 90-4 (KRP23_11519), partial mRNA blastn 5899 99 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
11368444 11368444 PRJNA670521_P_NODE_18369_length_436_cov_3.374656_g17627_i0 PRJNA670521 18369 436 3.374656 14.71350016 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 388 2.83e-103   NTclustered gi|2795034154|ref|XM_067934539.1| 4785 g17627 i0 84.422 78.697247706422 398 59 91 2 2 399 416 22 Phytophthora cinnamomi GTP-binding nuclear protein ran-1 (IUM83_10055), partial mRNA blastn 34312 388 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
12117333 12117333 PRJNA670521_P_NODE_29550_length_362_cov_1.598616_g28805_i0 PRJNA670521 29550 362 1.598616 5.78698992 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 372 2.32e-98   NTclustered gi|695463417|ref|XM_009540418.1| 67593 g28805 i0 87.385 90.8508287292818 325 39 90 2 6 329 637 960 Phytophthora sojae hypothetical protein mRNA blastn 32888 372 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
12117385 12117385 PRJNA670521_P_NODE_41570_length_318_cov_6.457143_g40825_i0 PRJNA670521 41570 318 6.457143 20.53371474 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 267 9.78e-67   NTclustered gi|2795019585|ref|XM_067931629.1| 4785 g40825 i0 87.288 73.5691823899371 236 26 74 4 81 314 52 285 Phytophthora cinnamomi peptidyl-prolyl cis-trans isomerase (IUM83_07343), partial mRNA blastn 23395 267 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
12117450 12117450 PRJNA670521_P_NODE_56530_length_280_cov_4.091787_g55785_i0 PRJNA670521 56530 280 4.091787 11.4570036 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 178 4.08e-40   NTclustered gi|301107519|ref|XM_002902796.1| 403677 g55785 i0 80.702 12.2071428571429 228 44 81 0 47 274 269 496 Phytophthora infestans T30-4 nucleoside diphosphate kinase B (PITG_08761), mRNA blastn 3418 178 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
13392057 13392057 PRJNA670521_P_NODE_10371_length_556_cov_44.792961_g9638_i0 PRJNA670521 10371 556 44.792961 249.04886316 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 1022 0   NTclustered gi|325194495|emb|FR825318.1| 890382 g9638 i0 99.82 250.086330935252 556 1 100 0 1 556 879 324 Albugo laibachii Nc14, genomic contig CONTIG_2072_NC14_v4_1125_53 blastn 139048 1022 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
13392134 13392134 PRJNA670521_P_NODE_29711_length_361_cov_5.104167_g28966_i0 PRJNA670521 29711 361 5.104167 18.42604287 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 91.6 7.25e-14   NTclustered gi|301098295|ref|XM_002898195.1| 403677 g28966 i0 89.041 0.404432132963989 73 8 20 0 258 330 234 306 Phytophthora infestans T30-4 uncharacterized protein (PITG_15069), partial mRNA blastn 146 91.6 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
13392429 13392429 PRJNA670521_P_NODE_8311_length_618_cov_1.352294_g7586_i0 PRJNA670521 8311 618 1.352294 8.35717692 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 333 1.95e-86   NTclustered gi|813183247|ref|XM_012350822.1| 695850 g7586 i0 84.195 33.1343042071197 348 49 56 5 222 566 415 71 Saprolegnia parasitica CBS 223.65 Ras-like GTP-binding protein YPT1 mRNA blastn 20477 333 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
14667028 14667028 PRJNA670521_P_NODE_13472_length_496_cov_10.122931_g12734_i0 PRJNA670521 13472 496 10.122931 50.20973776 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 302 4.36e-77   NTclustered gi|2795040529|ref|XM_067944818.1| 4785 g12734 i0 80.94 38.8004032258064 383 71 77 2 77 458 405 24 Phytophthora cinnamomi 60S ribosomal protein L23 (IUM83_19754), partial mRNA blastn 19245 302 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
14667300 14667300 PRJNA670521_P_NODE_74332_length_249_cov_1.244318_g73587_i0 PRJNA670521 74332 249 1.244318 3.09835182 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 121 6.09e-23   NTclustered gi|695408903|ref|XM_009526486.1| 67593 g73587 i0 76.496 1.71887550200803 234 47 92 8 19 248 2065 2294 Phytophthora sojae hypothetical protein partial mRNA blastn 428 121 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
15940920 15940920 PRJNA670521_P_NODE_34633_length_342_cov_0.936803_g33888_i0 PRJNA670521 34633 342 0.936803 3.20386626 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 340 6.16e-89   NTclustered gi|2794923360|ref|XM_067881981.1| 164328 g33888 i0 84.866 97.5087719298246 337 51 99 0 4 340 16 352 Phytophthora ramorum Calmodulin (KRP23_11430), partial mRNA blastn 33348 340 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
17216257 17216257 PRJNA670521_P_NODE_71054_length_251_cov_0.865169_g70309_i0 PRJNA670521 71054 251 0.865169 2.17157419 Phytophthora agathidicida 1642459 SAR_Eukaryotes SAR_Eukaryotes 226 1.2699999999999999e-54   NTclustered gi|2046503726|tpg|BK014403.1| 1642459 g70309 i0 83.401 92.1872509960159 247 37 98 4 1 245 13300 13544 TPA_asm: Phytophthora agathidicida mitochondrion, complete genome blastn 23139 226 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora agathidicida
18490548 18490548 PRJNA670521_P_NODE_37575_length_331_cov_1.786822_g36830_i0 PRJNA670521 37575 331 1.786822 5.91438082 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 106 2.36e-18   NTclustered gi|675168882|ref|XM_008895078.1| 761204 g36830 i0 78.035 12.1238670694864 173 34 52 3 161 331 587 417 Phytophthora parasitica INRA-310 60S ribosomal protein mRNA blastn 4013 106 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
18490832 18490832 PRJNA670521_P_NODE_85755_length_244_cov_0.900585_g85010_i0 PRJNA670521 85755 244 0.900585 2.1974274 Hyaloperonospora parasitica 123356 SAR_Eukaryotes SAR_Eukaryotes 446 8.639999999999999e-121   NTclustered gi|1321369325|dbj|LC229573.1| 123356 g85010 i0 99.59 94.3852459016394 244 1 100 0 1 244 13 256 Hyaloperonospora parasitica genes for ITS1, 5.8S rRNA, ITS2, partial and complete sequence, strain: Nazu-1 blastn 23030 446 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica
19764944 19764944 PRJNA670521_P_NODE_11956_length_521_cov_3.031250_g11221_i0 PRJNA670521 11956 521 3.03125 15.7928125 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 529 1.9399999999999998e-145   NTclustered gi|695468664|ref|XM_009541629.1| 67593 g11221 i0 88.117 90.6525911708253 446 51 85 2 37 481 556 112 Phytophthora sojae hypothetical protein mRNA blastn 47230 529 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
19764990 19764990 PRJNA670521_P_NODE_25076_length_386_cov_0.728435_g24332_i0 PRJNA670521 25076 386 0.728435 2.8117591 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 407 6.829999999999999e-109   NTclustered gi|2795016998|ref|XM_067930413.1| 4785 g24332 i0 86.01 98.3575129533679 386 46 99 8 1 382 288 669 Phytophthora cinnamomi Aconitate hydratase, mitochondrial (IUM83_06227), partial mRNA blastn 37966 407 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
19765144 19765144 PRJNA670521_P_NODE_63636_length_265_cov_1.052083_g62891_i0 PRJNA670521 63636 265 1.052083 2.78801995 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 158 4.99e-34   NTclustered gi|673038275|ref|XM_008874877.1| 157072 g62891 i0 83.832 50.5245283018868 167 25 63 2 2 167 69 234 Aphanomyces invadans 60S ribosomal protein L27a mRNA blastn 13389 158 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
21040596 21040596 PRJNA670521_P_NODE_27997_length_370_cov_1.215488_g27252_i0 PRJNA670521 27997 370 1.215488 4.4973056 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 276 1.92e-69   NTclustered gi|2795049511|ref|XM_067944443.1| 4785 g27252 i0 81.765 27.9783783783784 340 52 91 10 29 363 71 405 Phytophthora cinnamomi H/ACA ribonucleoprotein complex subunit 4 (IUM83_19396), partial mRNA blastn 10352 276 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
22842395 22842395 PRJNA670521_P_NODE_47278_length_303_cov_1.004348_g46533_i0 PRJNA670521 47278 303 1.004348 3.04317444 root 1 Root_unresolved Root_unresolved 239 2.02e-58   NTclustered gi|673036179|ref|XM_008873829.1| 157072 g46533 i0 82.963 87.9372937293729 270 40 88 5 36 302 2563 2829 Aphanomyces invadans hypothetical protein mRNA blastn 26645 239 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;