RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA670521" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA670521 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5741581 5741581 PRJNA670521_P_NODE_29565_length_362_cov_1.546713_g28820_i0 PRJNA670521 29565 362 1.546713 5.59910106 Strongyloides papillosus 174720 Nematoda Nematoda 324 6.59e-84   NTclustered gi|690018450|emb|LM525688.1| 174720 g28820 i0 84.132 89.1906077348066 334 53 92 0 1 334 81960 81627 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000085 blastn 32287 324 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
12117299 12117299 PRJNA670521_P_NODE_2150_length_1190_cov_3.203223_g1704_i0 PRJNA670521 2150 1190 3.203223 38.1183537 Strongyloides ratti 34506 Nematoda Nematoda 918 0   NTclustered gi|1376148845|ref|XM_024642710.1| 34506 g1704 i0 81.616 95.290756302521 1126 191 94 14 38 1155 1316 199 Strongyloides ratti Tubulin beta-2A chain (SRAE_2000390300), partial mRNA blastn 113396 918 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
13392156 13392156 PRJNA670521_P_NODE_35691_length_338_cov_1.162264_g34946_i0 PRJNA670521 35691 338 1.162264 3.92845232 Myctolaimus sp. RS5442 669110 Nematoda Nematoda 224 6.389999999999999e-54   NTclustered gi|256709245|gb|GQ422275.1| 669110 g34946 i0 87.179 42.6923076923077 195 25 58 0 79 273 43 237 Myctolaimus sp. RS5442 small subunit ribosomal protein 14 (rps-14) mRNA, partial cds blastn 14430 226 0.991150442477876 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Cylindrocorporidae Myctolaimus Myctolaimus sp. RS5442
21040565 21040565 PRJNA670521_P_NODE_2037_length_1215_cov_2.363398_g1599_i0 PRJNA670521 2037 1215 2.363398 28.7152857 Caenorhabditis elegans 6239 Nematoda Nematoda 263 5.26e-65   NTclustered gi|1972264765|ref|NM_001047395.5| 6239 g1599 i0 71.274 4.64855967078189 1107 296 90 20 110 1205 1891 796 Caenorhabditis elegans UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase (ogt-1), mRNA blastn 5648 263 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;