RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA670521" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA670521 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1164875 1164875 PRJNA670521_P_NODE_11801_length_524_cov_1.891353_g11066_i0 PRJNA670521 11801 524 1.891353 9.91068972 Pseudomonadati 3379134 Bacteria Bacteria 315 5.94e-81   NTclustered gi|2579665545|gb|CP043492.1| 43 g11066 i0 78.558 142.041984732824 527 78 97 29 17 524 452596 452086 Cystobacter fuscus strain Cbf 8 chromosome, complete genome blastn 74430 316 0.996835443037975 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Cystobacter Cystobacter fuscus
7016730 7016730 PRJNA670521_P_NODE_46606_length_304_cov_2.103896_g45861_i0 PRJNA670521 46606 304 2.103896 6.39584384 Vulgatibacter incomptus 1391653 Bacteria Bacteria 180 1.25e-40   NTclustered gi|913607065|gb|CP012332.1| 1391653 g45861 i0 86.957 4.75328947368421 161 19 53 2 145 304 640399 640240 Vulgatibacter incomptus strain DSM 27710, complete genome blastn 1445 180 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Vulgatibacteraceae Vulgatibacter Vulgatibacter incomptus
8291636 8291636 PRJNA670521_P_NODE_82887_length_245_cov_1.343023_g82142_i0 PRJNA670521 82887 245 1.343023 3.29040635 Sandaracinus amylolyticus 927083 Bacteria Bacteria 62.1 3.67e-5   NTclustered gi|816953346|gb|CP011125.1| 927083 g82142 i0 93.023 0.175510204081633 43 1 17 2 20 61 10190874 10190833 Sandaracinus amylolyticus strain DSM 53668, complete genome blastn 43 62.1 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae Sandaracinus Sandaracinus amylolyticus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;