RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA670521" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA670521 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
638197 638197 PRJNA670521_P_NODE_38621_length_328_cov_1.207843_g37876_i0 PRJNA670521 38621 328 1.207843 3.96172504 Fimicolochytrium jonesii 1396493 Fungi Fungi 102 3.02e-17   NTclustered gi|2432071943|ref|XM_053071778.1| 1396493 g37876 i0 90.789 27.094512195122 76 7 23 0 246 321 26 101 Fimicolochytrium jonesii S-adenosyl-L-methionine-dependent methyltransferase (EV422DRAFT_550495), partial mRNA blastn 8887 102 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
12117712 12117712 PRJNA670521_P_NODE_9450_length_581_cov_8.665354_g8718_i0 PRJNA670521 9450 581 8.665354 50.34570674 Fimicolochytrium jonesii 1396493 Fungi Fungi 357 1.09e-93   NTclustered gi|2432072949|ref|XM_053073468.1| 1396493 g8718 i0 81.306 80.3752151462995 444 79 76 4 51 492 247 688 Fimicolochytrium jonesii ubiquitin-related domain-containing protein (EV422DRAFT_586682), mRNA blastn 46698 357 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
17742817 17742817 PRJNA670521_P_NODE_10594_length_551_cov_1.541841_g9861_i0 PRJNA670521 10594 551 1.541841 8.49554391 Opisthokonta 33154 Fungi Fungi 399 1.6799999999999997e-106   NTclustered gi|2432171462|ref|XM_053112561.1| 110093 g9861 i0 82.121 92.8039927404719 481 72 86 12 3 476 1512 1985 Polychytrium aggregatum heat shock protein 90 kDa (BJ171DRAFT_524257), mRNA blastn 51135 403 0.990074441687345 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;