RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA670521" and tax_phylum = "Brachiopoda"

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tax_superkingdom 1

tax_phylum 1

  • Brachiopoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA670521 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12117335 12117335 PRJNA670521_P_NODE_3070_length_997_cov_10.535714_g1808_i1 PRJNA670521 3070 997 10.535714 105.04106858 Lingula anatina 7574 Brachiopoda other_Eukaryota 407 1.87e-108   NTclustered gi|919089027|ref|XM_013526062.1| 7574 g1808 i1 82.965 45.4463390170512 452 75 45 2 47 497 102 552 PREDICTED: Lingula anatina calmodulin (LOC106152471), transcript variant X2, mRNA blastn 45310 407 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
15940864 15940864 PRJNA670521_P_NODE_2273_length_1157_cov_6.559963_g1808_i0 PRJNA670521 2273 1157 6.559963 75.89877191 Lingula anatina 7574 Brachiopoda other_Eukaryota 394 1.6999999999999995e-104   NTclustered gi|919089025|ref|XM_013526060.1| 7574 g1808 i0 82.766 38.3630077787381 441 76 38 0 671 1111 543 103 PREDICTED: Lingula anatina calmodulin (LOC106152471), transcript variant X1, mRNA blastn 44386 394 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
24116858 24116858 PRJNA670521_P_NODE_8739_length_603_cov_1.854717_g8009_i0 PRJNA670521 8739 603 1.854717 11.18394351 Metazoa 33208 Brachiopoda other_Eukaryota 56.5 0.005   NTclustered gi|919041215|ref|XM_013548457.1| 7574 g8009 i0 100 1.79436152570481 30 0 5 0 113 142 1939 1910 PREDICTED: Lingula anatina zinc finger protein 236 (LOC106169102), transcript variant X2, mRNA blastn 1082 56.5 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;