RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA670521" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA670521 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
638220 638220 PRJNA670521_P_NODE_45821_length_307_cov_0.888889_g45076_i0 PRJNA670521 45821 307 0.888889 2.72888923 Pseudobdellovibrio sp. HCB154 3386277 Bacteria Bacteria 442 1.4499999999999995e-119   NTclustered gi|2872995934|gb|CP176530.1| 3386277 g45076 i0 92.557 83.6351791530945 309 21 100 2 1 307 700328 700020 Pseudobdellovibrio sp. HCB154 chromosome, complete genome blastn 25676 442 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio sp. HCB154
3716669 3716669 PRJNA670521_P_NODE_47363_length_302_cov_2.248908_g46618_i0 PRJNA670521 47363 302 2.248908 6.79170216 Peredibacter 263370 Bacteria Bacteria 547 2.9399999999999987e-151   NTclustered gi|2631252187|gb|CP139487.1| 28202 g46618 i0 99.338 120.513245033113 302 2 100 0 1 302 511020 511321 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 36395 547 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
5741667 5741667 PRJNA670521_P_NODE_53945_length_286_cov_1.802817_g53200_i0 PRJNA670521 53945 286 1.802817 5.15605662 Peredibacter starrii 28202 Bacteria Bacteria 497 2.82e-136   NTclustered gi|2631252187|gb|CP139487.1| 28202 g53200 i0 97.917 182.468531468531 288 4 100 1 1 286 511692 511979 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 52186 497 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
21040705 21040705 PRJNA670521_P_NODE_53717_length_287_cov_1.233645_g52972_i0 PRJNA670521 53717 287 1.233645 3.54056115 Bdellovibrio sp. qaytius 1916293 Bacteria Bacteria 368 2.32e-97   NTclustered gi|1552089877|gb|CP025734.1| 1916293 g52972 i0 89.726 165.369337979094 292 25 100 4 1 287 666734 666443 Bdellovibrio sp. qaytius chromosome, complete genome blastn 47461 368 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. qaytius
24116817 24116817 PRJNA670521_P_NODE_51819_length_291_cov_1.701835_g51074_i0 PRJNA670521 51819 291 1.701835 4.95233985 Peredibacter 263370 Bacteria Bacteria 477 3.75e-130   NTclustered gi|2631252187|gb|CP139487.1| 28202 g51074 i0 96.22 200.305841924399 291 11 100 0 1 291 512969 512679 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 58289 477 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;