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contig_metadata

16 rows where analysis = "blastn", bioproject = "PRJNA670521" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 16 ✖

bioproject 1

  • PRJNA670521 · 16 ✖

analysis 1

  • blastn · 16 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1164897 1164897 PRJNA670521_P_NODE_26901_length_375_cov_1.867550_g26157_i0 PRJNA670521 26901 375 1.86755 7.0033125 Bryopsis 3128 Plants Plants 327 5.3e-85   NTclustered gi|969822372|gb|KT950953.1| 3129 g26157 i0 82.749 91.504 371 60 98 4 1 369 720 352 Bryopsis maxima actin gene, partial cds blastn 34314 327 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Bryopsidaceae Bryopsis Bryopsis maxima
2440189 2440189 PRJNA670521_P_NODE_10322_length_557_cov_5.278926_g9589_i0 PRJNA670521 10322 557 5.278926 29.40361782 Eukaryota 2759 Plants Plants 316 1.76e-81   NTclustered gi|2082259086|ref|XM_001697336.2| 3055 g9589 i0 81.654 63.2226211849192 387 65 69 6 124 507 127 510 Chlamydomonas reinhardtii ribosomal protein S14 (CHLRE_11g480150v5), mRNA blastn 35215 318 0.993710691823899 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
3189152 3189152 PRJNA670521_P_NODE_68603_length_254_cov_1.276243_g67858_i0 PRJNA670521 68603 254 1.276243 3.24165722 Pseudochloris wilhelmii 1418016 Plants Plants 82.4 2.94e-11   NTclustered gi|723457419|ref|NC_025547.1| 1418016 g67858 i0 83.516 45.2716535433071 91 12 36 2 164 251 75852 75942 Pseudochloris wilhelmii culture-collection SAG:1.80 chloroplast, complete genome blastn 11499 82.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Pseudochloris Pseudochloris wilhelmii
4466117 4466117 PRJNA670521_P_NODE_47364_length_302_cov_2.227074_g46619_i0 PRJNA670521 47364 302 2.227074 6.72576348 Auxenochlorella protothecoides 3075 Plants Plants 169 2.68e-37   NTclustered gi|760449124|ref|XM_011403329.1| 3075 g46619 i0 86.538 1.72847682119205 156 18 51 3 11 165 398 245 Auxenochlorella protothecoides Aconitate hydratase, mitochondrial partial mRNA blastn 522 169 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
5741597 5741597 PRJNA670521_P_NODE_33005_length_347_cov_2.529197_g32260_i0 PRJNA670521 33005 347 2.529197 8.7763135900000009 Auxenochlorella protothecoides 3075 Plants Plants 217 1.1e-51   NTclustered gi|760437614|ref|XM_011397574.1| 3075 g32260 i0 79.365 66.5821325648415 315 59 90 6 13 324 324 13 Auxenochlorella protothecoides GTP-binding protein YPTC1 partial mRNA blastn 23104 217 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
7016729 7016729 PRJNA670521_P_NODE_46586_length_304_cov_2.645022_g45841_i0 PRJNA670521 46586 304 2.645022 8.04086688 Monoraphidium neglectum 145388 Plants Plants 128 4.58e-25   NTclustered gi|926789524|ref|XM_014047782.1| 145388 g45841 i0 79.474 6.35855263157895 190 31 61 5 8 193 1 186 Monoraphidium neglectum 60S ribosomal protein L38 mRNA blastn 1933 128 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
8291420 8291420 PRJNA670521_P_NODE_53767_length_287_cov_1.079439_g53022_i0 PRJNA670521 53767 287 1.079439 3.09798993 Chlamydomonas reinhardtii 3055 Plants Plants 206 1.92e-48   NTclustered gi|2082270260|ref|XM_043072311.1| 3055 g53022 i0 80.843 18.5749128919861 261 50 91 0 27 287 934 674 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_17g724150v5), mRNA blastn 5331 206 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
8817943 8817943 PRJNA670521_P_NODE_2907_length_1027_cov_30.492662_g2378_i0 PRJNA670521 2907 1027 30.492662 313.15963874 Tetradesmus 91192 Plants Plants 475 5.219999999999998e-129   NTclustered gi|2576955161|gb|OR551483.1| 269609 g2378 i0 80.556 59.744888023369 684 78 65 35 1 665 4666 5313 Tetradesmus bajacalifornicus culture SAG:3.99 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 61358 475 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus bajacalifornicus
9566687 9566687 PRJNA670521_P_NODE_36748_length_334_cov_1.547893_g36003_i0 PRJNA670521 36748 334 1.547893 5.16996262 Monoraphidium neglectum 145388 Plants Plants 134 1.09e-26   NTclustered gi|926774671|ref|XM_014040356.1| 145388 g36003 i0 84.444 1.82035928143713 135 21 40 0 97 231 7 141 Monoraphidium neglectum molecular chaperone HtpG mRNA blastn 608 134 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
11368460 11368460 PRJNA670521_P_NODE_3529_length_930_cov_26.326721_g2378_i1 PRJNA670521 3529 930 26.326721 244.8385053 Tetradesmus 91192 Plants Plants 475 4.709999999999999e-129   NTclustered gi|2576955161|gb|OR551483.1| 269609 g2378 i1 80.556 65.4150537634409 684 78 72 35 266 930 5313 4666 Tetradesmus bajacalifornicus culture SAG:3.99 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 60836 475 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus bajacalifornicus
11368469 11368469 PRJNA670521_P_NODE_4329_length_844_cov_4.712062_g3695_i0 PRJNA670521 4329 844 4.712062 39.76980328 Eukaryota 2759 Plants Plants 433 2.6e-116   NTclustered gi|2082237163|ref|XM_043058766.1| 3055 g3695 i0 79.835 67.7997630331754 605 112 71 8 78 677 790 191 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_01g039250v5), mRNA blastn 57223 433 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
15940887 15940887 PRJNA670521_P_NODE_27613_length_372_cov_1.110368_g26869_i0 PRJNA670521 27613 372 1.110368 4.13056896 Chlamydomonas reinhardtii 3055 Plants Plants 254 9.04e-63   NTclustered gi|2082248650|ref|XM_043063418.1| 3055 g26869 i0 79.718 5.68279569892473 355 68 95 4 3 355 338 690 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_06g290950v5), mRNA blastn 2114 254 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
18490540 18490540 PRJNA670521_P_NODE_34815_length_341_cov_1.283582_g34070_i0 PRJNA670521 34815 341 1.283582 4.37701462 Volvox carteri 3067 Plants Plants 58.4 6.93e-4   NTclustered gi|302847288|ref|XM_002955133.1| 3068 g34070 i0 97.059 0.196480938416422 34 1 10 0 141 174 867 834 Volvox carteri f. nagariensis uncharacterized protein (VOLCADRAFT_83092), mRNA blastn 67 58.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
18490627 18490627 PRJNA670521_P_NODE_58695_length_276_cov_1.083744_g57950_i0 PRJNA670521 58695 276 1.083744 2.99113344 Astrephomene perforata 47776 Plants Plants 62.1 4.22e-5   NTclustered gi|2089721439|gb|MZ445389.1| 47776 g57950 i0 95 0.144927536231884 40 1 14 1 204 243 154 192 Astrephomene perforata strain NIES-564 hypothetical protein mRNA, partial cds blastn 40 62.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Astrephomenaceae Astrephomene Astrephomene perforata
19764945 19764945 PRJNA670521_P_NODE_11976_length_521_cov_1.861607_g11241_i0 PRJNA670521 11976 521 1.861607 9.69897247 Polytomella sp. Pringsheim 198.80 37502 Plants Plants 311 7.63e-80   NTclustered gi|28193497|emb|AJ439528.1| 37502 g11241 i0 78.814 86.3301343570058 472 92 90 8 2 469 128 595 Polytomella sp. 'Pringsheim 198.80' mRNA for 40S ribosomal protein s5 (rs5 gene) blastn 44978 311 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Polytomella Polytomella sp. Pringsheim 198.80
24864222 24864222 PRJNA670521_P_NODE_23700_length_394_cov_1.196262_g22956_i0 PRJNA670521 23700 394 1.196262 4.71327228 Monoraphidium neglectum 145388 Plants Plants 263 1.6000000000000004e-65   NTclustered gi|926789920|ref|XM_014047980.1| 145388 g22956 i0 84 65.8629441624365 275 42 70 2 100 373 103 376 Monoraphidium neglectum peptidyl-prolyl cis-trans isomerase, cyclophilin-type mRNA blastn 25950 263 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;