RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA670521" and tax_clade = "Stenosarchaea group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 3 ✖

bioproject 1

  • PRJNA670521 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4466003 4466003 PRJNA670521_P_NODE_21184_length_412_cov_0.820059_g20441_i0 PRJNA670521 21184 412 0.820059 3.37864308 Halobaculum roseum 2175149 Archaea Archaea 52.8 0.04   NTclustered gi|2090005450|gb|CP082286.1| 2175149 g20441 i0 96.875 0.0776699029126214 32 0 8 1 102 133 2558217 2558187 Halobaculum roseum strain CGMCC 1.15501 chromosome, complete genome blastn 32 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halobaculum Halobaculum roseum
18490666 18490666 PRJNA670521_P_NODE_68715_length_254_cov_1.154696_g67970_i0 PRJNA670521 68715 254 1.154696 2.93292784 Haloferax larsenii 302484 Archaea Archaea 52.8 0.023   NTclustered gi|2288350906|gb|CP078063.1| 302484 g67970 i0 100 0.110236220472441 28 0 11 0 73 100 143192 143165 Haloferax larsenii strain NCIM 5678 chromosome, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax larsenii
21040815 21040815 PRJNA670521_P_NODE_73737_length_250_cov_0.870056_g72992_i0 PRJNA670521 73737 250 0.870056 2.17514 Methanosarcina lacustris 170861 Archaea Archaea 52.8 0.023   NTclustered gi|805377189|gb|CP009515.1| 1434111 g72992 i0 100 0.112 28 0 11 0 29 56 781978 782005 Methanosarcina lacustris Z-7289, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina lacustris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;