RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA670521" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 6 ✖

bioproject 1

  • PRJNA670521 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4466187 4466187 PRJNA670521_P_NODE_63464_length_265_cov_1.385417_g62719_i0 PRJNA670521 63464 265 1.385417 3.67135505 Thecamonas trahens 529818 Root_unresolved Root_unresolved 134 8.410000000000001e-27   NTclustered gi|923135694|ref|XM_013905859.1| 461836 g62719 i0 81.437 26.2452830188679 167 27 62 4 100 264 928 764 Thecamonas trahens ATCC 50062 V-type H(+)-translocating pyrophosphatase, variant (AMSG_01802), mRNA blastn 6955 134 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
9566649 9566649 PRJNA670521_P_NODE_27768_length_371_cov_1.500000_g27023_i0 PRJNA670521 27768 371 1.5 5.565 Thecamonas trahens 529818 Root_unresolved Root_unresolved 403 8.45e-108   NTclustered gi|923120664|ref|XM_013898350.1| 461836 g27023 i0 86.364 99.6927223719677 374 45 100 6 1 371 1306 936 Thecamonas trahens ATCC 50062 ATP-dependent RNA helicase eIF4A (AMSG_10343), partial mRNA blastn 36986 403 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
12644195 12644195 PRJNA670521_P_NODE_51330_length_292_cov_2.178082_g50585_i0 PRJNA670521 51330 292 2.178082 6.35999944 Mamiellophyceae 1035538 Root_unresolved Root_unresolved 285 2.45e-72   NTclustered gi|923120664|ref|XM_013898350.1| 461836 g50585 i0 84.3 92.9897260273973 293 44 100 2 1 292 1196 905 Thecamonas trahens ATCC 50062 ATP-dependent RNA helicase eIF4A (AMSG_10343), partial mRNA blastn 27153 287 0.993031358885017 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
17216023 17216023 PRJNA670521_P_NODE_15574_length_467_cov_1.954315_g14832_i0 PRJNA670521 15574 467 1.954315 9.12665105 Thecamonas trahens 529818 Root_unresolved Root_unresolved 383 1.4199999999999996e-101   NTclustered gi|923132712|ref|XM_013904368.1| 461836 g14832 i0 81.739 17.8565310492505 460 82 98 2 9 467 592 1050 Thecamonas trahens ATCC 50062 actin-like protein 3 (AMSG_03466), partial mRNA blastn 8339 383 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
21040573 21040573 PRJNA670521_P_NODE_22677_length_401_cov_0.939024_g21934_i0 PRJNA670521 22677 401 0.939024 3.76548624 Thecamonas trahens 529818 Root_unresolved Root_unresolved 62.1 6.39e-5   NTclustered gi|923122824|ref|XM_013899428.1| 461836 g21934 i0 82.667 0.458852867830424 75 7 21 4 179 253 3136 3204 Thecamonas trahens ATCC 50062 CMGC/DYRK/YAK protein kinase (AMSG_09172), mRNA blastn 184 62.1 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
24864442 24864442 PRJNA670521_P_NODE_7520_length_647_cov_2.059233_g6802_i0 PRJNA670521 7520 647 2.059233 13.32323751 Thecamonas trahens 529818 Root_unresolved Root_unresolved 488 4.1399999999999985e-133   NTclustered gi|923129792|ref|XM_013902908.1| 461836 g6802 i0 83.364 59.7604327666151 541 77 83 9 101 635 545 12 Thecamonas trahens ATCC 50062 Ras-like C3 botulinum toxin substrate 1 (AMSG_04690), mRNA blastn 38665 488 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;