RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA669701" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA669701 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1911879 1911879 PRJNA669701_P_NODE_36722_length_389_cov_2.702532_g36327_i0 PRJNA669701 36722 389 2.702532 10.51284948 Globisporangium splendens 82926 SAR_Eukaryotes SAR_Eukaryotes 287 9.36e-73   NTclustered gi|9858457|gb|AF085344.1|AF085344 82926 g36327 i0 79.949 66.2082262210797 389 78 100 0 1 389 66 454 Pythium splendens calmodulin mRNA, complete cds blastn 25755 287 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens
3715413 3715413 PRJNA669701_P_NODE_103983_length_254_cov_3.027624_g103588_i0 PRJNA669701 103983 254 3.027624 7.69016496 root 1 Root_unresolved Root_unresolved 470 5.37e-128   NTclustered gi|354801984|gb|JN113287.1| 4787 g103588 i0 100 100 254 0 100 0 1 254 6326 6073 Phytophthora infestans transgenic clone Cu24_cyc_6_R1 retrotransposon gypsy-like, complete sequence; hygromycin phosphotransferase gene, complete cds; and retrotransposons gypsy-like, complete sequence blastn 25400 470 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
14665251 14665251 PRJNA669701_P_NODE_80912_length_281_cov_1.134615_g80517_i0 PRJNA669701 80912 281 1.134615 3.18826815 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 154 6.9e-33   NTclustered gi|673024575|ref|XM_008868027.1| 157072 g80517 i0 85.235 44.0818505338078 149 22 53 0 2 150 2257 2405 Aphanomyces invadans tubulin beta chain mRNA blastn 12387 154 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
22313423 22313423 PRJNA669701_P_NODE_66558_length_302_cov_4.484716_g66163_i0 PRJNA669701 66558 302 4.484716 13.54384232 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 276 1.53e-69   NTclustered gi|695460914|ref|XM_009539807.1| 67593 g66163 i0 85.824 86.9635761589404 261 35 86 2 35 294 358 99 Phytophthora sojae hypothetical protein mRNA blastn 26263 276 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;