RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA669701" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA669701 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7542048 7542048 PRJNA669701_P_NODE_27806_length_445_cov_2.188172_g27411_i0 PRJNA669701 27806 445 2.188172 9.7373654 Nitrospira 1234 Bacteria Bacteria 701 0   NTclustered gi|2863129529|dbj|AP038806.1| 70125 g27411 i0 95.056 51.0224719101124 445 22 100 0 1 445 3063211 3062767 MAG: Nitrospira sp. NFB02 DNA, complete genome blastn 22705 706 0.992917847025496 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
8288432 8288432 PRJNA669701_P_NODE_123127_length_246_cov_2.283237_g122732_i0 PRJNA669701 123127 246 2.283237 5.61676302 Nitrospira defluvii 330214 Bacteria Bacteria 449 6.74e-122   NTclustered gi|300603458|emb|FP929003.1| 330214 g122732 i0 99.593 1.36178861788618 246 1 100 0 1 246 824498 824743 Candidatus Nitrospira defluvii chromosome, complete genome blastn 335 449 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira defluvii
17213023 17213023 PRJNA669701_P_NODE_112814_length_250_cov_0.870056_g112419_i0 PRJNA669701 112814 250 0.870056 2.17514 Nitrospira japonica 1325564 Bacteria Bacteria 124 4.729999999999999e-24   NTclustered gi|1167499077|emb|LT828648.1| 1325564 g112419 i0 92.045 0.352 88 7 35 0 155 242 1413045 1412958 Nitrospira japonica isolate Genome sequencing of Nitrospira japonica strain NJ11 genome assembly, chromosome: I blastn 88 124 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira japonica
22841852 22841852 PRJNA669701_P_NODE_5018_length_1110_cov_3.294118_g4731_i0 PRJNA669701 5018 1110 3.294118 36.5647098 Nitrospira 1234 Bacteria Bacteria 1858 0   NTclustered gi|2863129529|dbj|AP038806.1| 70125 g4731 i0 97.019 100.500900900901 1107 29 99 3 1 1106 3063251 3064354 MAG: Nitrospira sp. NFB02 DNA, complete genome blastn 111556 1873 0.991991457554725 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;