RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA669701" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA669701 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4463487 4463487 PRJNA669701_P_NODE_20364_length_521_cov_4.066964_g19969_i0 PRJNA669701 20364 521 4.066964 21.18888244 Rotylenchulus reniformis 239373 Nematoda Nematoda 126 2.97e-24   NTclustered gi|758742691|gb|KP054086.1| 239373 g19969 i0 93.103 15.0345489443378 87 5 17 1 1 86 378 464 Rotylenchulus reniformis isolate CQ10 clone 6 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 7833 126 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Hoplolaimidae Rotylenchulus Rotylenchulus reniformis
9564909 9564909 PRJNA669701_P_NODE_89428_length_271_cov_1.095960_g89033_i0 PRJNA669701 89428 271 1.09596 2.9700516 Caenorhabditis elegans 6239 Nematoda Nematoda 60.2 1.49e-4   NTclustered gi|687866618|emb|LK928722.1| 6239 g89033 i0 100 1.42435424354244 32 0 12 0 238 269 10600 10631 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_contig0000367 blastn 386 60.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
24115730 24115730 PRJNA669701_P_NODE_121559_length_247_cov_0.885057_g121164_i0 PRJNA669701 121559 247 0.885057 2.18609079 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 54.7 0.006   NTclustered gi|2082282127|ref|XM_043079447.1| 6279 g121164 i0 100 0.983805668016194 29 0 12 0 183 211 67 39 Brugia malayi uncharacterized protein (Bm148), partial mRNA blastn 243 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;