RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA669701" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA669701 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1163928 1163928 PRJNA669701_P_NODE_143321_length_240_cov_2.652695_g142926_i0 PRJNA669701 143321 240 2.652695 6.366468 root 1 Root_unresolved Root_unresolved 56.5 0.002   NTclustered gi|552812483|ref|XM_005843650.1| 554065 g142926 i0 94.444 1.0875 36 2 15 0 9 44 1347 1382 Chlorella variabilis hypothetical protein (CHLNCDRAFT_140005) mRNA, complete cds blastn 261 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
3187349 3187349 PRJNA669701_P_NODE_94683_length_265_cov_1.203125_g94288_i0 PRJNA669701 94683 265 1.203125 3.18828125 Mantoniella tinhauana 3097027 Plants Plants 67.6 8.65e-7   NTclustered gi|2735153277|gb|CP140062.1| 3097027 g94288 i0 87.931 13.1018867924528 58 5 23 2 22 78 9243666 9243610 Mantoniella tinhauana isolate LFS chromosome 1 blastn 3472 67.6 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Mantoniella Mantoniella tinhauana
4462975 4462975 PRJNA669701_P_NODE_116944_length_248_cov_1.422857_g116549_i0 PRJNA669701 116944 248 1.422857 3.52868536 Bathycoccus prasinos 41875 Plants Plants 56.5 0.002   NTclustered gi|612393573|ref|XM_007512245.1| 41875 g116549 i0 100 2.97983870967742 30 0 12 0 77 106 430 401 Bathycoccus prasinos unknown protein (Bathy07g03370), partial mRNA blastn 739 56.5 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Bathycoccaceae Bathycoccus Bathycoccus prasinos
21038556 21038556 PRJNA669701_P_NODE_62557_length_310_cov_2.793249_g62162_i0 PRJNA669701 62557 310 2.793249 8.6590719 Volvox carteri 3067 Plants Plants 182 3.5399999999999987e-41   NTclustered gi|302851945|ref|XM_002957449.1| 3068 g62162 i0 88.591 14.3870967741935 149 17 48 0 1 149 426 278 Volvox carteri f. nagariensis component of cytosolic 80S ribosome and 60S large subunit (rpl23), mRNA blastn 4460 182 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;