RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA669701" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA669701 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11368209 11368209 PRJNA669701_P_NODE_81909_length_279_cov_3.398058_g81514_i0 PRJNA669701 81909 279 3.398058 9.48058182 Bacteria 2 Bacteria Bacteria 505 1.6399999999999995e-138   NTclustered gi|197360287|gb|EU979075.1| 34034 g81514 i0 99.283 99.9677419354839 279 2 100 0 1 279 36 314 Uncultured delta proteobacterium clone g66 16S ribosomal RNA gene, partial sequence blastn 27891 505 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
16467374 16467374 PRJNA669701_P_NODE_59713_length_315_cov_4.888430_g59318_i0 PRJNA669701 59713 315 4.88843 15.3985545 Pseudomonadota 1224 Bacteria Bacteria 577 3.9299999999999986e-160   NTclustered gi|202950689|emb|FM206054.1| 34034 g59318 i0 99.683 103.984126984127 315 1 100 0 1 315 16 330 Uncultured delta proteobacterium partial 16S rRNA gene, clone GW_1 blastn 32755 582 0.991408934707904 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;