RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA669701" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA669701 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12115612 12115612 PRJNA669701_P_NODE_85530_length_275_cov_2.019802_g85135_i0 PRJNA669701 85530 275 2.019802 5.5544555 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 196 1.1e-45   NTclustered gi|300078498|gb|GU001160.1| 5755 g85135 i0 80.783 1.02181818181818 281 28 100 19 1 275 5656 5916 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 281 196 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
23588216 23588216 PRJNA669701_P_NODE_143359_length_240_cov_2.371257_g142964_i0 PRJNA669701 143359 240 2.371257 5.6910168 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 324 4.14e-84   NTclustered gi|470501180|ref|XM_004347076.1| 1257118 g142964 i0 93.548 0.904166666666667 217 14 90 0 1 217 1145 1361 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_384800), partial mRNA blastn 217 324 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
23589094 23589094 PRJNA669701_P_NODE_80239_length_281_cov_4.687500_g79844_i0 PRJNA669701 80239 281 4.6875 13.171875 Dictyostelium discoideum 44689 Evosea other_Eukaryota 198 3.14e-46   NTclustered gi|66803966|ref|XM_630705.1| 352472 g79844 i0 79.787 5.96085409252669 282 49 99 7 3 280 305 28 Dictyostelium discoideum AX4 S60 ribosomal protein L23 (rpl23) mRNA, complete cds blastn 1675 198 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;