RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA667863" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA667863 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1910194 1910194 PRJNA667863_P_NODE_1942_length_399_cov_2.263804_g1908_i0 PRJNA667863 1942 399 2.263804 9.03257796 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 556 6.64e-154   NTclustered gi|300078498|gb|GU001160.1| 5755 g1908 i0 92.269 35.4035087719298 401 17 99 8 6 399 7818 7425 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 14126 556 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
5737336 5737336 PRJNA667863_P_NODE_12925_length_248_cov_0.880000_g12891_i0 PRJNA667863 12925 248 0.88 2.1824 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 135 2.17e-27   NTclustered gi|470509261|ref|XM_004349682.1| 1257118 g12891 i0 86.29 3.40322580645161 124 17 50 0 1 124 171 48 Acanthamoeba castellanii str. Neff ribosomal protein S10p/S20e, putative (ACA1_034550), partial mRNA blastn 844 135 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
5737503 5737503 PRJNA667863_P_NODE_7345_length_275_cov_2.287129_g7311_i0 PRJNA667863 7345 275 2.287129 6.28960475 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 387 6.1e-103   NTclustered gi|470484649|ref|XM_004344039.1| 1257118 g7311 i0 92 99.8436363636364 275 22 100 0 1 275 5293 5567 Acanthamoeba castellanii str. Neff PremRNA processing splicing factor 8, putative (ACA1_054320), partial mRNA blastn 27457 387 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
7012566 7012566 PRJNA667863_P_NODE_3306_length_340_cov_3.779026_g3272_i0 PRJNA667863 3306 340 3.779026 12.8486884 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 361 4.7e-95   NTclustered gi|300078498|gb|GU001160.1| 5755 g3272 i0 85.794 13.2058823529412 359 30 100 15 1 340 6464 6108 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 4490 361 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
7012586 7012586 PRJNA667863_P_NODE_5406_length_295_cov_6.360360_g5372_i0 PRJNA667863 5406 295 6.36036 18.763062 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 333 8.729999999999999e-87   NTclustered gi|300078498|gb|GU001160.1| 5755 g5372 i0 87.291 13.7254237288136 299 28 100 9 1 295 7066 6774 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 4049 333 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
22840890 22840890 PRJNA667863_P_NODE_10478_length_255_cov_1.565934_g10444_i0 PRJNA667863 10478 255 1.565934 3.9931317 Acanthamoeba 5754 Discosea other_Eukaryota 455 1.51e-123   NTclustered gi|2044079936|gb|MZ272128.1| 5756 g10444 i0 98.824 100.937254901961 255 3 100 0 1 255 1424 1170 Acanthamoeba sp. isolate AcW149 small subunit ribosomal RNA gene, partial sequence blastn 25739 455 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba sp.
23586839 23586839 PRJNA667863_P_NODE_819_length_545_cov_9.779661_g787_i0 PRJNA667863 819 545 9.779661 53.29915245 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 737 0   NTclustered gi|300078498|gb|GU001160.1| 5755 g787 i0 91.15 18.5376146788991 565 18 100 19 1 545 5925 5373 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 10103 737 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;