RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA667863" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA667863 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1910121 1910121 PRJNA667863_P_NODE_13142_length_248_cov_0.880000_g13108_i0 PRJNA667863 13142 248 0.88 2.1824 Fimicolochytrium jonesii 1396493 Fungi Fungi 89.8 1.71e-13   NTclustered gi|2432081011|ref|XM_053070530.1| 1396493 g13108 i0 81.905 0.423387096774194 105 19 42 0 33 137 330 226 Fimicolochytrium jonesii 50S ribosomal protein L30e-like protein (EV422DRAFT_532370), mRNA blastn 105 89.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
12113271 12113271 PRJNA667863_P_NODE_1790_length_408_cov_3.629851_g1756_i0 PRJNA667863 1790 408 3.629851 14.80979208 Fimicolochytrium jonesii 1396493 Fungi Fungi 128 6.3299999999999995e-25   NTclustered gi|2432097581|ref|XM_053071233.1| 1396493 g1756 i0 82.313 4.77941176470588 147 26 36 0 5 151 83 229 Fimicolochytrium jonesii 30S ribosomal protein S30e (EV422DRAFT_541825), mRNA blastn 1950 128 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
17211921 17211921 PRJNA667863_P_NODE_10894_length_253_cov_1.077778_g10860_i0 PRJNA667863 10894 253 1.077778 2.72677834 Fimicolochytrium jonesii 1396493 Fungi Fungi 202 2.15e-47   NTclustered gi|2432072489|ref|XM_053067168.1| 1396493 g10860 i0 81.102 54.9683794466403 254 46 100 2 1 253 190 442 Fimicolochytrium jonesii beta-tubulin (EV422DRAFT_430739), mRNA blastn 13907 202 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
24860293 24860293 PRJNA667863_P_NODE_8600_length_266_cov_2.155440_g8566_i0 PRJNA667863 8600 266 2.15544 5.7334704 Polychytrium aggregatum 110093 Fungi Fungi 178 3.849999999999999e-40   NTclustered gi|2432159776|ref|XM_053111801.1| 110093 g8566 i0 85.799 56.2518796992481 169 22 63 2 7 174 226 393 Polychytrium aggregatum ribosomal protein S8e/ribosomal biogenesis NSA2 (BJ171DRAFT_514033), mRNA blastn 14963 178 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;