RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA667863" and tax_phylum = "Brachiopoda"

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tax_superkingdom 1

tax_phylum 1

  • Brachiopoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA667863 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3184899 3184899 PRJNA667863_P_NODE_17943_length_233_cov_2.412500_g17909_i0 PRJNA667863 17943 233 2.4125 5.621125 Lingula anatina 7574 Brachiopoda other_Eukaryota 185 1.9699999999999998e-42   NTclustered gi|919076531|ref|XM_013563902.1| 7574 g17909 i0 81.034 1.69527896995708 232 44 99 0 1 232 751 520 PREDICTED: Lingula anatina UDP-glucuronic acid decarboxylase 1 (LOC106180039), mRNA blastn 395 185 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
12113248 12113248 PRJNA667863_P_NODE_1570_length_427_cov_22.474576_g1536_i0 PRJNA667863 1570 427 22.474576 95.96643952 Lingula anatina 7574 Brachiopoda other_Eukaryota 219 3.839999999999999e-52   NTclustered gi|919048216|ref|XM_013551806.1| 7574 g1536 i0 76.372 44.8688524590164 419 92 97 6 2 417 72 486 PREDICTED: Lingula anatina 60S ribosomal protein L27a (LOC106171454), mRNA blastn 19159 219 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
15936960 15936960 PRJNA667863_P_NODE_6633_length_282_cov_1.234450_g6599_i0 PRJNA667863 6633 282 1.23445 3.481149 Lingula anatina 7574 Brachiopoda other_Eukaryota 255 1.85e-63   NTclustered gi|919053626|ref|XM_013553294.1| 7574 g6599 i0 82.979 53.5780141843972 282 48 100 0 1 282 927 1208 PREDICTED: Lingula anatina Bardet-Biedl syndrome 4 protein (LOC106172533), mRNA blastn 15109 255 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;