RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA667863" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA667863 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4991805 4991805 PRJNA667863_P_NODE_15664_length_243_cov_0.905882_g15630_i0 PRJNA667863 15664 243 0.905882 2.20129326 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 69.4 2.17e-7   NTclustered gi|1027957737|ref|XM_016799042.1| 31271 g15630 i0 100 10.4691358024691 37 0 15 0 205 241 907 871 Plasmodium chabaudi chabaudi CIR protein (PCHAS_0626800), partial mRNA blastn 2544 69.4 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium chabaudi
19760898 19760898 PRJNA667863_P_NODE_17776_length_234_cov_3.819876_g17742_i0 PRJNA667863 17776 234 3.819876 8.93850984 Cryptosporidium ubiquitum 857276 SAR_Eukaryotes SAR_Eukaryotes 102 2.05e-17   NTclustered gi|1624734488|ref|XM_029018197.1| 857276 g17742 i0 86.17 0.401709401709402 94 13 40 0 35 128 334 427 Cryptosporidium ubiquitum 60s ribosomal protein L19 (cubi_01185), partial mRNA blastn 94 102 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium ubiquitum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;