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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA667863" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 10 ✖

bioproject 1

  • PRJNA667863 · 10 ✖

analysis 1

  • blastn · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4462004 4462004 PRJNA667863_P_NODE_9824_length_259_cov_1.344086_g9790_i0 PRJNA667863 9824 259 1.344086 3.48118274 Auxenochlorella protothecoides 3075 Plants Plants 174 4.83e-39   NTclustered gi|760437194|ref|XM_011397364.1| 3075 g9790 i0 83.246 3.07335907335907 191 30 73 2 8 197 432 243 Auxenochlorella protothecoides 40S ribosomal protein S3a partial mRNA blastn 796 174 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
5737297 5737297 PRJNA667863_P_NODE_10345_length_256_cov_1.120219_g10311_i0 PRJNA667863 10345 256 1.120219 2.86776064 Volvox carteri 3067 Plants Plants 141 4.83e-29   NTclustered gi|302833676|ref|XM_002948356.1| 3068 g10311 i0 84.138 53.7734375 145 23 57 0 31 175 732 876 Volvox carteri f. nagariensis component of cytosolic 80S ribosome and 60S large subunit (rpl3), mRNA blastn 13766 141 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
5737542 5737542 PRJNA667863_P_NODE_9685_length_259_cov_3.107527_g9651_i0 PRJNA667863 9685 259 3.107527 8.04849493 Chlorella sorokiniana 3076 Plants Plants 182 2.88e-41   NTclustered gi|81157942|dbj|AB240142.1| 3076 g9651 i0 80.769 7.35521235521236 234 43 90 2 1 233 1823 2055 Chlorella sorokiniana EF-2 mRNA for elongation factor 2, partial cds blastn 1905 182 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sorokiniana
7012530 7012530 PRJNA667863_P_NODE_1746_length_412_cov_1.710914_g1712_i0 PRJNA667863 1746 412 1.710914 7.04896568 Auxenochlorella protothecoides 3075 Plants Plants 228 6.1299999999999984e-55   NTclustered gi|760444070|ref|XM_011400802.1| 3075 g1712 i0 77.806 27.8349514563107 392 72 93 11 1 384 400 16 Auxenochlorella protothecoides 40S ribosomal protein S9-1 partial mRNA blastn 11468 228 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
12113213 12113213 PRJNA667863_P_NODE_13270_length_247_cov_1.752874_g13236_i0 PRJNA667863 13270 247 1.752874 4.32959878 Monoraphidium neglectum 145388 Plants Plants 147 9.96e-31   NTclustered gi|926794628|ref|XM_014050334.1| 145388 g13236 i0 80.711 27.8259109311741 197 30 78 8 55 247 384 192 Monoraphidium neglectum ribonucleoprotein-associated protein mRNA blastn 6873 147 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
12113327 12113327 PRJNA667863_P_NODE_5270_length_298_cov_1.600000_g5236_i0 PRJNA667863 5270 298 1.6 4.768 Chlamydomonas reinhardtii 3055 Plants Plants 52.8 0.028   NTclustered gi|2082265387|ref|XM_043070277.1| 3055 g5236 i0 96.774 0.104026845637584 31 1 10 0 213 243 1609 1639 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_14g626000v5), mRNA blastn 31 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
17212092 17212092 PRJNA667863_P_NODE_6234_length_286_cov_1.112676_g6200_i0 PRJNA667863 6234 286 1.112676 3.18225336 Chlamydomonas reinhardtii 3055 Plants Plants 294 3.98e-75   NTclustered gi|224593220|gb|FJ715708.1| 3055 g6200 i0 85.512 91.6538461538462 283 39 99 2 1 282 21 302 Chlamydomonas reinhardtii strain CC1690 translation elongation factor-like protein mRNA, partial cds blastn 26213 294 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
22311305 22311305 PRJNA667863_P_NODE_1758_length_411_cov_0.911243_g1724_i0 PRJNA667863 1758 411 0.911243 3.74520873 Chlorella variabilis 554065 Plants Plants 224 7.909999999999999e-54   NTclustered gi|552829322|ref|XM_005847613.1| 554065 g1724 i0 79.077 99.7080291970803 325 66 79 2 87 410 537 214 Chlorella variabilis hypothetical protein (CHLNCDRAFT_134066) mRNA, complete cds blastn 40980 224 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
23586859 23586859 PRJNA667863_P_NODE_9699_length_259_cov_2.672043_g9665_i0 PRJNA667863 9699 259 2.672043 6.92059137 Coccomyxa subellipsoidea 248742 Plants Plants 226 1.31e-54   NTclustered gi|545358305|ref|XM_005644675.1| 574566 g9665 i0 82.677 95.5907335907336 254 44 98 0 5 258 1059 806 Coccomyxa subellipsoidea C-169 26S proteasome AAA-ATPase subunit RPT6a mRNA blastn 24758 226 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
24860245 24860245 PRJNA667863_P_NODE_4980_length_303_cov_1.669565_g4946_i0 PRJNA667863 4980 303 1.669565 5.05878195 Chlamydomonas reinhardtii 3055 Plants Plants 392 1.46e-104   NTclustered gi|18122|emb|X61624.1| 3055 g4946 i0 90.066 99.3564356435644 302 30 99 0 1 302 1363 1062 Chlamydomonas reinhardtii atp2 (atpB) mRNA blastn 30105 392 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;