RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA667863" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 3 ✖

bioproject 1

  • PRJNA667863 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5737437 5737437 PRJNA667863_P_NODE_1985_length_397_cov_1.160494_g1951_i0 PRJNA667863 1985 397 1.160494 4.60716118 Dicrateria rotunda 2703868 Haptophyta other_Eukaryota 220 9.85e-53   NTclustered gi|259419544|emb|FN392559.1| 2703868 g1951 i0 83.471 6.3727959697733 242 34 60 5 95 333 284 46 Imantonia rotunda partial mRNA for ADP-ribosylation factor 3, contig 10068 blastn 2530 220 1 Eukaryota Haptista   Haptophyta   Isochrysidales Isochrysidaceae Dicrateria Dicrateria rotunda
8287178 8287178 PRJNA667863_P_NODE_14607_length_245_cov_0.895349_g14573_i0 PRJNA667863 14607 245 0.895349 2.19360505 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 150 7.62e-32   NTclustered gi|551577272|ref|XM_005774215.1| 280463 g14573 i0 87.121 33.2816326530612 132 17 54 0 27 158 1 132 Emiliania huxleyi CCMP1516 40S ribosomal protein S4 partial mRNA blastn 8154 150 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
8287326 8287326 PRJNA667863_P_NODE_6887_length_279_cov_2.271845_g6853_i0 PRJNA667863 6887 279 2.271845 6.33844755 Diacronema lutheri 2081491 Haptophyta other_Eukaryota 183 8.73e-42   NTclustered gi|54399513|gb|AY729487.1| 2081491 g6853 i0 79.921 0.910394265232975 254 47 90 3 1 252 917 1168 Pavlova lutheri EF-1 alpha-like protein (efl) mRNA, partial cds blastn 254 183 1 Eukaryota Haptista   Haptophyta Pavlovophyceae Pavlovales Pavlovaceae Diacronema Diacronema lutheri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;