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contig_metadata

15 rows where analysis = "blastn", bioproject = "PRJNA667863" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 15 ✖

bioproject 1

  • PRJNA667863 · 15 ✖

analysis 1

  • blastn · 15 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
634074 634074 PRJNA667863_P_NODE_16601_length_241_cov_7.952381_g16567_i0 PRJNA667863 16601 241 7.952381 19.16523821 Echinostelium bisporum 1973072 Evosea other_Eukaryota 320 5.39e-83   NTclustered gi|1496293921|gb|MH814572.1| 1973072 g16567 i0 90.795 100.045643153527 239 22 99 0 1 239 1047 809 Echinostelium bisporum isolate Nx14-A1 translation elongation factor EF-1 subunit alpha mRNA, partial cds blastn 24111 320 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Echinosteliales Echinosteliidae Echinostelium Echinostelium bisporum
634118 634118 PRJNA667863_P_NODE_19581_length_198_cov_6.152000_g19547_i0 PRJNA667863 19581 198 6.152 12.18096 Soliformovum irregulare 435424 Evosea other_Eukaryota 300 5.55e-77   NTclustered gi|146448863|gb|EF513199.1| 435424 g19547 i0 93.939 15.979797979798 198 12 100 0 1 198 718 915 Soliformovum irregulare elongation factor 1A (EF1A) gene, partial cds blastn 3164 300 1 Eukaryota Amoebozoa   Evosea Variosea Fractovitellida Soliformoviidae Soliformovum Soliformovum irregulare
634134 634134 PRJNA667863_P_NODE_341_length_779_cov_7.169972_g313_i0 PRJNA667863 341 779 7.169972 55.85408188 Hagiwaraea rhizopodium 361088 Evosea other_Eukaryota 490 1.3999999999999995e-133   NTclustered gi|169930326|gb|EU360787.1| 361088 g313 i0 78.431 61.9768934531451 765 155 98 10 20 779 998 239 Hagiwaraea rhizopodium isolate Ausk Y-4 elongation factor 1 alpha gene, partial cds blastn 48280 490 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Hagiwaraea Hagiwaraea rhizopodium
1910194 1910194 PRJNA667863_P_NODE_1942_length_399_cov_2.263804_g1908_i0 PRJNA667863 1942 399 2.263804 9.03257796 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 556 6.64e-154   NTclustered gi|300078498|gb|GU001160.1| 5755 g1908 i0 92.269 35.4035087719298 401 17 99 8 6 399 7818 7425 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 14126 556 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
4461989 4461989 PRJNA667863_P_NODE_844_length_537_cov_1.290948_g811_i0 PRJNA667863 844 537 1.290948 6.93239076 Echinostelium bisporum 1973072 Evosea other_Eukaryota 638 3.18e-178   NTclustered gi|1496293921|gb|MH814572.1| 1973072 g811 i0 88.104 92.6014897579143 538 62 100 2 1 537 845 309 Echinostelium bisporum isolate Nx14-A1 translation elongation factor EF-1 subunit alpha mRNA, partial cds blastn 49727 638 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Echinosteliales Echinosteliidae Echinostelium Echinostelium bisporum
5737336 5737336 PRJNA667863_P_NODE_12925_length_248_cov_0.880000_g12891_i0 PRJNA667863 12925 248 0.88 2.1824 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 135 2.17e-27   NTclustered gi|470509261|ref|XM_004349682.1| 1257118 g12891 i0 86.29 3.40322580645161 124 17 50 0 1 124 171 48 Acanthamoeba castellanii str. Neff ribosomal protein S10p/S20e, putative (ACA1_034550), partial mRNA blastn 844 135 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
5737503 5737503 PRJNA667863_P_NODE_7345_length_275_cov_2.287129_g7311_i0 PRJNA667863 7345 275 2.287129 6.28960475 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 387 6.1e-103   NTclustered gi|470484649|ref|XM_004344039.1| 1257118 g7311 i0 92 99.8436363636364 275 22 100 0 1 275 5293 5567 Acanthamoeba castellanii str. Neff PremRNA processing splicing factor 8, putative (ACA1_054320), partial mRNA blastn 27457 387 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
7012566 7012566 PRJNA667863_P_NODE_3306_length_340_cov_3.779026_g3272_i0 PRJNA667863 3306 340 3.779026 12.8486884 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 361 4.7e-95   NTclustered gi|300078498|gb|GU001160.1| 5755 g3272 i0 85.794 13.2058823529412 359 30 100 15 1 340 6464 6108 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 4490 361 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
7012586 7012586 PRJNA667863_P_NODE_5406_length_295_cov_6.360360_g5372_i0 PRJNA667863 5406 295 6.36036 18.763062 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 333 8.729999999999999e-87   NTclustered gi|300078498|gb|GU001160.1| 5755 g5372 i0 87.291 13.7254237288136 299 28 100 9 1 295 7066 6774 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 4049 333 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
12113384 12113384 PRJNA667863_P_NODE_9590_length_260_cov_1.572193_g9556_i0 PRJNA667863 9590 260 1.572193 4.0877018 Soliformovum irregulare 435424 Evosea other_Eukaryota 387 5.72e-103   NTclustered gi|146448863|gb|EF513199.1| 435424 g9556 i0 93.462 91.5923076923077 260 17 100 0 1 260 445 704 Soliformovum irregulare elongation factor 1A (EF1A) gene, partial cds blastn 23814 387 1 Eukaryota Amoebozoa   Evosea Variosea Fractovitellida Soliformoviidae Soliformovum Soliformovum irregulare
19760914 19760914 PRJNA667863_P_NODE_1956_length_398_cov_1.590769_g1922_i0 PRJNA667863 1956 398 1.590769 6.33126062 Heterostelium album 2086695 Evosea other_Eukaryota 71.3 1.05e-7   NTclustered gi|1160570028|ref|XM_020574508.1| 670386 g1922 i0 92 2.3894472361809 50 4 13 0 21 70 95 46 Polysphondylium pallidum PN500 eukaryotic release factor 3 (eRF3), partial mRNA blastn 951 71.3 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
22311326 22311326 PRJNA667863_P_NODE_2018_length_395_cov_1.186335_g1984_i0 PRJNA667863 2018 395 1.186335 4.68602325 Trichia sordida 435425 Evosea other_Eukaryota 448 4.13e-121   NTclustered gi|146448865|gb|EF513200.1| 435425 g1984 i0 90.116 79.8481012658228 344 34 87 0 52 395 1287 944 Trichia sordida elongation factor 1A (EF1A) gene, partial cds blastn 31540 448 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Trichiida Trichiidae Trichia Trichia sordida
22840890 22840890 PRJNA667863_P_NODE_10478_length_255_cov_1.565934_g10444_i0 PRJNA667863 10478 255 1.565934 3.9931317 Acanthamoeba 5754 Discosea other_Eukaryota 455 1.51e-123   NTclustered gi|2044079936|gb|MZ272128.1| 5756 g10444 i0 98.824 100.937254901961 255 3 100 0 1 255 1424 1170 Acanthamoeba sp. isolate AcW149 small subunit ribosomal RNA gene, partial sequence blastn 25739 455 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba sp.
23586747 23586747 PRJNA667863_P_NODE_2119_length_388_cov_11.120635_g2085_i0 PRJNA667863 2119 388 11.120635 43.1480638 Heterostelium album 2086695 Evosea other_Eukaryota 161 5.9e-35   NTclustered gi|1160574132|ref|XM_020577244.1| 670386 g2085 i0 92.105 30.4407216494845 114 9 29 0 2 115 1018 1131 Polysphondylium pallidum PN500 actin (act10), partial mRNA blastn 11811 161 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
23586839 23586839 PRJNA667863_P_NODE_819_length_545_cov_9.779661_g787_i0 PRJNA667863 819 545 9.779661 53.29915245 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 737 0   NTclustered gi|300078498|gb|GU001160.1| 5755 g787 i0 91.15 18.5376146788991 565 18 100 19 1 545 5925 5373 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 10103 737 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;