RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA666695" and tax_phylum = "Verrucomicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA666695 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6266680 6266680 PRJNA666695_S_NODE_184465_length_156_cov_1.982609_g183371_i0 PRJNA666695 184465 156 1.982609 3.09287004 Opitutaceae 134623 Bacteria Bacteria 254 3.28e-63   NTclustered gi|807238858|gb|CP011265.1| 1637999 g183371 i0 96.711 41.8397435897436 152 5 97 0 3 154 1903699 1903548 Verrucomicrobia bacterium IMCC26134, complete genome blastn 6527 255 0.996078431372549 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobia bacterium IMCC26134
10835987 10835987 PRJNA666695_S_NODE_22069_length_399_cov_716.106145_g20976_i0 PRJNA666695 22069 399 716.106145 2857.26351855 uncultured Ruficoccus sp. 2175960 Bacteria Bacteria 379 1.54e-100   NTclustered gi|2907625921|emb|OZ223481.1| 2175960 g20976 i0 84.478 298.100250626566 393 52 97 8 12 399 741226 740838 MAG: uncultured Ruficoccus sp. isolate b2a3d85c-2e17-47e2-9e32-7ac6437316b9 genome assembly, chromosome: 10 blastn 118942 379 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Puniceicoccales Cerasicoccaceae Ruficoccus uncultured Ruficoccus sp.
19014090 19014090 PRJNA666695_S_NODE_130555_length_192_cov_1.523179_g129461_i0 PRJNA666695 130555 192 1.523179 2.92450368 Coraliomargarita 442430 Bacteria Bacteria 126 9.6e-25   NTclustered gi|470486190|ref|NR_076741.1| 395922 g129461 i0 87.85 140.359375 107 13 56 0 13 119 1324 1430 Coraliomargarita akajimensis strain 04OKA010-24 23S ribosomal RNA gene, complete sequence blastn 26949 126 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Puniceicoccales Coraliomargaritaceae Coraliomargarita Coraliomargarita akajimensis
19758885 19758885 PRJNA666695_S_NODE_25816_length_377_cov_1.642857_g24723_i0 PRJNA666695 25816 377 1.642857 6.19357089 Opitutales bacterium 2026772 Bacteria Bacteria 411 5.139999999999999e-110   NTclustered gi|2891482117|emb|OZ219851.1| 2026772 g24723 i0 86.458 129.519893899204 384 41 100 11 1 377 1410399 1410020 MAG: Opitutales bacterium isolate e4292735-b3b5-42df-bce3-ad3ef7a88f44 genome assembly, chromosome: 10 blastn 48829 411 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales     Opitutales bacterium
24857105 24857105 PRJNA666695_S_NODE_145660_length_180_cov_5.294964_g144566_i0 PRJNA666695 145660 180 5.294964 9.5309352 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 233 5.08e-57   NTclustered gi|2874254020|emb|OY970345.1| 412056 g144566 i0 90.11 59.0777777777778 182 15 100 3 1 180 3893393 3893573 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04212.bin.2.122 genome assembly, chromosome: 1 blastn 10634 233 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;