RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA666695" and tax_phylum = "Thermoproteota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Thermoproteota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA666695 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7540710 7540710 PRJNA666695_S_NODE_193106_length_151_cov_3.200000_g192012_i0 PRJNA666695 193106 151 3.2 4.832 Saccharolobus 2100760 Archaea Archaea 54.7 0.003   NTclustered gi|2064866271|gb|CP077713.1| 2286 g192012 i0 100 2.6887417218543 29 0 19 0 28 56 56261 56289 Saccharolobus shibatae strain S38A chromosome, complete genome blastn 406 54.7 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Saccharolobus Saccharolobus shibatae
8283708 8283708 PRJNA666695_S_NODE_128307_length_194_cov_1.202614_g127213_i0 PRJNA666695 128307 194 1.202614 2.33307116 Sulfurisphaera ohwakuensis 69656 Archaea Archaea 52.8 0.017   NTclustered gi|1780177153|gb|CP045484.1| 69656 g127213 i0 100 0.304123711340206 28 0 14 0 95 122 1653432 1653405 Sulfurisphaera ohwakuensis strain TA-1 chromosome, complete genome blastn 59 52.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Sulfurisphaera Sulfurisphaera ohwakuensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;