RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA666695" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA666695 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
633554 633554 PRJNA666695_S_NODE_88361_length_232_cov_3.376963_g87267_i0 PRJNA666695 88361 232 3.376963 7.83455416 Nitratidesulfovibrio vulgaris 881 Bacteria Bacteria 182 2.54e-41   NTclustered gi|2431398965|gb|CP116247.1| 881 g87267 i0 81.057 0.978448275862069 227 43 98 0 4 230 39191 38965 Nitratidesulfovibrio vulgaris strain L2 plasmid pDsulf-L2-2, complete sequence blastn 227 182 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Nitratidesulfovibrio Nitratidesulfovibrio vulgaris
1908490 1908490 PRJNA666695_S_NODE_39222_length_322_cov_4.960854_g38128_i0 PRJNA666695 39222 322 4.960854 15.97394988 Desulfobacterales bacterium 2044940 Bacteria Bacteria 63.9 1.4e-5   NTclustered gi|2621701778|emb|OY759308.1| 2044940 g38128 i0 75.969 0.400621118012422 129 27 39 4 98 223 1316677 1316804 MAG: Desulfobacterales bacterium isolate 4b48c405-a8b0-44ce-a896-9916d3c4254b genome assembly, chromosome: 1 blastn 129 63.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium
9562055 9562055 PRJNA666695_S_NODE_9328_length_561_cov_4.407692_g6609_i1 PRJNA666695 9328 561 4.407692 24.72715212 uncultured Desulfobacterium sp. 201089 Bacteria Bacteria 54.7 0.015   NTclustered gi|308273377|emb|FR695874.1| 201089 g6609 i1 100 0.0516934046345811 29 0 5 0 433 461 109232 109260 Uncultured Desulfobacterium sp. genomic DNA, clone SelH_gw24b_gw46b blastn 29 54.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteriaceae Desulfobacterium uncultured Desulfobacterium sp.
21035716 21035716 PRJNA666695_S_NODE_77537_length_246_cov_2.502439_g76443_i0 PRJNA666695 77537 246 2.502439 6.15599994 Desulfomicrobium baculatum 899 Bacteria Bacteria 163 9.84e-36   NTclustered gi|256576994|gb|CP001629.1| 525897 g76443 i0 80.465 30.609756097561 215 40 87 2 1 214 2499455 2499242 Desulfomicrobium baculatum DSM 4028, complete genome blastn 7530 163 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfomicrobiaceae Desulfomicrobium Desulfomicrobium baculatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;