contig_metadata
10 rows where analysis = "blastn", bioproject = "PRJNA666695" and tax_phylum = "Spirochaetota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1908437 | 1908437 | PRJNA666695_S_NODE_37222_length_329_cov_1.475694_g36128_i0 | PRJNA666695 | 37222 | 329 | 1.475694 | 4.85503326 | Sphaerochaetaceae bacterium | 2791017 | Bacteria | Bacteria | 52.8 | 0.031 | NTclustered | gi|2621786047|emb|OY782505.1| | 2791017 | g36128 | i0 | 100 | 0.0851063829787234 | 28 | 0 | 9 | 0 | 150 | 177 | 794950 | 794977 | MAG: Sphaerochaetaceae bacterium isolate dbdf49c1-f841-4570-9102-cd3a9ce64f89 genome assembly, chromosome: 1 | blastn | 28 | 52.8 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Sphaerochaetaceae | Sphaerochaetaceae bacterium | |||
| 6266269 | 6266269 | PRJNA666695_S_NODE_110945_length_209_cov_1.642857_g109851_i0 | PRJNA666695 | 110945 | 209 | 1.642857 | 3.43357113 | Leptospira | 171 | Bacteria | Bacteria | 52.8 | 0.018 | NTclustered | gi|2197053765|gb|CP092157.1| | 173 | g109851 | i0 | 94.118 | 12.0334928229665 | 34 | 2 | 16 | 0 | 45 | 78 | 101950 | 101917 | Leptospira interrogans strain FMAS_AP6 chromosome 2, complete sequence | blastn | 2515 | 52.8 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Leptospirales | Leptospiraceae | Leptospira | Leptospira interrogans | ||
| 8285154 | 8285154 | PRJNA666695_S_NODE_24807_length_382_cov_6.090909_g23714_i0 | PRJNA666695 | 24807 | 382 | 6.090909 | 23.26727238 | Borrelia persica | 44448 | Bacteria | Bacteria | 52.8 | 0.036 | NTclustered | gi|308922591|gb|HM131216.1| | 44448 | g23714 | i0 | 100 | 0.0732984293193717 | 28 | 0 | 7 | 0 | 170 | 197 | 5037 | 5010 | Borrelia persica strain HL2610 23S ribosomal RNA (rrlA) gene, partial sequence; hydrolase, hypoxanthine phosphoribosyltransferase (hpt), adenylosuccinate synthase (purA), adenylosuccinate lyase (purB), and 3-methyladenine DNA glycosylase (mag) genes, complete cds; and tRNA-Ile (ileT), tRNA-Ala (alaT), and 16S ribosomal RNA (rrs) genes, complete sequence | blastn | 28 | 52.8 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Borreliaceae | Borrelia | Borrelia persica | ||
| 10834565 | 10834565 | PRJNA666695_S_NODE_124629_length_197_cov_1.179487_g123535_i0 | PRJNA666695 | 124629 | 197 | 1.179487 | 2.32358939 | Borreliella garinii | 29519 | Bacteria | Bacteria | 56.5 | 0.001 | NTclustered | gi|2371376074|gb|CP075225.1| | 29519 | g123535 | i0 | 100 | 0.152284263959391 | 30 | 0 | 15 | 0 | 117 | 146 | 263444 | 263415 | Borreliella garinii strain JAASAAM1103 chromosome, complete genome | blastn | 30 | 56.5 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Borreliaceae | Borreliella | Borreliella garinii | ||
| 17208594 | 17208594 | PRJNA666695_S_NODE_130654_length_192_cov_1.523179_g129560_i0 | PRJNA666695 | 130654 | 192 | 1.523179 | 2.92450368 | Borreliella spielmanii | 88916 | Bacteria | Bacteria | 54.7 | 0.005 | NTclustered | gi|2537422926|gb|CP124042.1| | 88916 | g129560 | i0 | 96.875 | 0.166666666666667 | 32 | 1 | 17 | 0 | 83 | 114 | 750682 | 750651 | Borreliella spielmanii strain Pmew chromosome, complete genome | blastn | 32 | 54.7 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Borreliaceae | Borreliella | Borreliella spielmanii | ||
| 19014504 | 19014504 | PRJNA666695_S_NODE_22655_length_395_cov_12.870056_g21562_i0 | PRJNA666695 | 22655 | 395 | 12.870056 | 50.8367212 | Leptospira | 171 | Bacteria | Bacteria | 56.5 | 0.003 | NTclustered | gi|2891609709|gb|CP130638.1| | 173 | g21562 | i0 | 90.698 | 4.34177215189873 | 43 | 2 | 11 | 2 | 331 | 373 | 1007585 | 1007545 | Leptospira interrogans strain Mankarso chromosome I, complete sequence | blastn | 1715 | 56.5 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Leptospirales | Leptospiraceae | Leptospira | Leptospira interrogans | ||
| 19760423 | 19760423 | PRJNA666695_S_NODE_91196_length_229_cov_2.750000_g90102_i0 | PRJNA666695 | 91196 | 229 | 2.75 | 6.2975 | Brachyspira murdochii | 84378 | Bacteria | Bacteria | 71.3 | 5.64e-8 | NTclustered | gi|296016874|gb|CP001959.1| | 526224 | g90102 | i0 | 100 | 0.331877729257642 | 38 | 0 | 17 | 0 | 192 | 229 | 3174533 | 3174496 | Brachyspira murdochii DSM 12563, complete genome | blastn | 76 | 71.3 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Brachyspirales | Brachyspiraceae | Brachyspira | Brachyspira murdochii | ||
| 21035872 | 21035872 | PRJNA666695_S_NODE_85837_length_235_cov_3.716495_g84743_i0 | PRJNA666695 | 85837 | 235 | 3.716495 | 8.73376325 | Brachyspira intermedia | 84377 | Bacteria | Bacteria | 73.1 | 1.62e-8 | NTclustered | gi|343385146|gb|CP002874.1| | 1045858 | g84743 | i0 | 77.519 | 0.548936170212766 | 129 | 23 | 54 | 6 | 107 | 232 | 2582460 | 2582335 | Brachyspira intermedia PWS/A, complete genome | blastn | 129 | 73.1 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Brachyspirales | Brachyspiraceae | Brachyspira | Brachyspira intermedia | ||
| 21565036 | 21565036 | PRJNA666695_S_NODE_38097_length_326_cov_1.950877_g37003_i0 | PRJNA666695 | 38097 | 326 | 1.950877 | 6.35985902 | Borrelia | 138 | Bacteria | Bacteria | 52.8 | 0.031 | NTclustered | gi|2111391439|gb|CP084623.1| | 140 | g37003 | i0 | 100 | 0.773006134969325 | 28 | 0 | 9 | 0 | 254 | 281 | 647994 | 647967 | Borrelia hermsii strain ML2 chromosome, complete genome | blastn | 252 | 52.8 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Borreliaceae | Borrelia | Borrelia hermsii | ||
| 23582682 | 23582682 | PRJNA666695_S_NODE_1039_length_1451_cov_48.184397_g674_i0 | PRJNA666695 | 1039 | 1451 | 48.184397 | 699.15560047 | Borreliella japonica | 34095 | Bacteria | Bacteria | 110 | 8.71e-19 | NTclustered | gi|2537434022|gb|CP124062.1| | 34095 | g674 | i0 | 96.923 | 5.00344589937974 | 65 | 2 | 4 | 0 | 84 | 148 | 503407 | 503343 | Borreliella japonica strain Miyazaki2E chromosome, complete genome | blastn | 7260 | 110 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Borreliaceae | Borreliella | Borreliella japonica |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;