RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA666695" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA666695 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3714251 3714251 PRJNA666695_S_NODE_135383_length_188_cov_2.129252_g134289_i0 PRJNA666695 135383 188 2.129252 4.00299376 Planctomycetia 203683 Bacteria Bacteria 52.8 0.016   NTclustered gi|2874253853|emb|OY969909.1| 1914239 g134289 i0 100 0.446808510638298 28 0 15 0 35 62 7487899 7487926 MAG: uncultured Gemmataceae bacterium isolate MFD01275.bin.c.1 genome assembly, chromosome: 1 blastn 84 52.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   uncultured Gemmataceae bacterium
4461377 4461377 PRJNA666695_S_NODE_88344_length_232_cov_3.497382_g87250_i0 PRJNA666695 88344 232 3.497382 8.11392624 Sedimentisphaerales bacterium 2813034 Bacteria Bacteria 52.8 0.021   NTclustered gi|2621705864|emb|OY763926.1| 2813034 g87250 i0 100 0.120689655172414 28 0 12 0 85 112 271248 271275 MAG: Sedimentisphaerales bacterium isolate 7f5c64f7-1a0d-4936-834e-775057159072 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Sedimentisphaerales     Sedimentisphaerales bacterium
15932858 15932858 PRJNA666695_S_NODE_103213_length_216_cov_2.931429_g102119_i0 PRJNA666695 103213 216 2.931429 6.33188664 Aquisphaera giovannonii 406548 Bacteria Bacteria 283 6.21e-72   NTclustered gi|1730068067|gb|CP042997.1| 406548 g102119 i0 90.455 55.1666666666667 220 14 100 7 1 216 5180414 5180198 Aquisphaera giovannonii strain OJF2 chromosome, complete genome blastn 11916 283 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Aquisphaera Aquisphaera giovannonii
18482792 18482792 PRJNA666695_S_NODE_122555_length_198_cov_2.968153_g121461_i0 PRJNA666695 122555 198 2.968153 5.87694294 Urbifossiella limnaea 2528023 Bacteria Bacteria 278 2.6e-70   NTclustered gi|1712585314|gb|CP036273.1| 2528023 g121461 i0 93.617 135.257575757576 188 9 94 3 12 198 4212472 4212287 Urbifossiella limnaea strain ETA_A1 chromosome, complete genome blastn 26781 278 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Urbifossiella Urbifossiella limnaea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;