RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA666695" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA666695 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1908958 1908958 PRJNA666695_S_NODE_58122_length_276_cov_12.212766_g57028_i0 PRJNA666695 58122 276 12.212766 33.70723416 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 52.8 0.025   NTclustered gi|2794895333|ref|XM_067923466.1| 135588 g57028 i0 100 0.101449275362319 28 0 10 0 1 28 601 574 Histomonas meleagridis XYPPX repeat family protein (GO595_009747), partial mRNA blastn 28 52.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
4461545 4461545 PRJNA666695_S_NODE_95124_length_225_cov_1.750000_g94030_i0 PRJNA666695 95124 225 1.75 3.9375 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 52.8 0.02   NTclustered gi|2806447930|ref|XM_068499353.1| 1144522 g94030 i0 100 0.124444444444444 28 0 12 0 166 193 1329 1302 Tritrichomonas foetus uncharacterized protein (TRFO_17050), partial mRNA blastn 28 52.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
9561108 9561108 PRJNA666695_S_NODE_51028_length_291_cov_3.312000_g49934_i0 PRJNA666695 51028 291 3.312 9.63792 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 52.8 0.027   NTclustered gi|2319633734|ref|XM_001328002.2| 412133 g49934 i0 100 0.0962199312714777 28 0 10 0 261 288 288 315 Trichomonas vaginalis G3 inner centromere protein, ARK binding region-containing protein (TVAGG3_0259540), partial mRNA blastn 28 52.8 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
10836205 10836205 PRJNA666695_S_NODE_29429_length_359_cov_2.981132_g28336_i0 PRJNA666695 29429 359 2.981132 10.70226388 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 52.8 0.034   NTclustered gi|2806473247|ref|XM_068508863.1| 1144522 g28336 i0 100 0.0779944289693593 28 0 8 0 3 30 216 189 Tritrichomonas foetus eukaryotic release factor 3 GTPase subunit (TRFO_33069), partial mRNA blastn 28 52.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
10837676 10837676 PRJNA666695_S_NODE_93389_length_227_cov_1.731183_g92295_i0 PRJNA666695 93389 227 1.731183 3.92978541 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 60.2 1.21e-4   NTclustered gi|2794864018|ref|XM_067915123.1| 135588 g92295 i0 85.965 0.251101321585903 57 7 25 1 85 141 507 452 Histomonas meleagridis small GTP-binding protein (GO595_002236), partial mRNA blastn 57 60.2 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
22308393 22308393 PRJNA666695_S_NODE_156918_length_173_cov_1.393939_g155824_i0 PRJNA666695 156918 173 1.393939 2.41151447 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 52.8 0.015   NTclustered gi|2806482628|ref|XM_068495444.1| 1144522 g155824 i0 100 0.161849710982659 28 0 16 0 23 50 200 173 Tritrichomonas foetus uncharacterized protein (TRFO_10413), partial mRNA blastn 28 52.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
23584567 23584567 PRJNA666695_S_NODE_20879_length_408_cov_6.008174_g19786_i0 PRJNA666695 20879 408 6.008174 24.51334992 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 54.7 0.011   NTclustered gi|2794859708|ref|XM_067913970.1| 135588 g19786 i0 100 0.071078431372549 29 0 7 0 310 338 761 733 Histomonas meleagridis Arf GTPase activating protein (GO595_000120), partial mRNA blastn 29 54.7 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;