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contig_metadata

18 rows where analysis = "blastn", bioproject = "PRJNA666695" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 18 ✖

tax_clade 1

bioproject 1

  • PRJNA666695 · 18 ✖

analysis 1

  • blastn · 18 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
630568 630568 PRJNA666695_S_NODE_128301_length_194_cov_1.202614_g127207_i0 PRJNA666695 128301 194 1.202614 2.33307116 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 104 4.56e-18   NTclustered gi|698783348|ref|XM_009826416.1| 112090 g127207 i0 94.118 9.97938144329897 68 4 35 0 2 69 137 70 Aphanomyces astaci hypothetical protein mRNA blastn 1936 104 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
632509 632509 PRJNA666695_S_NODE_43841_length_309_cov_2.067164_g42747_i0 PRJNA666695 43841 309 2.067164 6.38753676 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 110 1.69e-19   NTclustered gi|813218947|ref|XM_012355461.1| 695850 g42747 i0 81.818 2.48543689320388 132 22 42 2 148 278 611 481 Saprolegnia parasitica CBS 223.65 peroxiredoxin mRNA blastn 768 110 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
4460000 4460000 PRJNA666695_S_NODE_29524_length_358_cov_11.545741_g28431_i0 PRJNA666695 29524 358 11.545741 41.33375278 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 189 2.48e-43   NTclustered gi|2795036376|ref|XM_067936376.1| 4785 g28431 i0 80.567 17.3240223463687 247 46 69 2 31 276 190 435 Phytophthora cinnamomi 40S ribosomal protein S16 (IUM83_11796), partial mRNA blastn 6202 189 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
7011931 7011931 PRJNA666695_S_NODE_84326_length_237_cov_3.051020_g83232_i0 PRJNA666695 84326 237 3.05102 7.2309174 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 117 7.44e-22   NTclustered gi|301105318|ref|XM_002901697.1| 403677 g83232 i0 81.013 3.22784810126582 158 20 65 9 1 153 157 309 Phytophthora infestans T30-4 elongation factor 2 (PITG_10941), mRNA blastn 765 117 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
8285949 8285949 PRJNA666695_S_NODE_55087_length_282_cov_6.286307_g53993_i0 PRJNA666695 55087 282 6.286307 17.72738574 Plasmopara halstedii 4781 SAR_Eukaryotes SAR_Eukaryotes 172 1.91e-38   NTclustered gi|2248513440|ref|NC_063805.1| 4781 g53993 i0 81.166 61.1524822695035 223 35 78 6 22 242 27495 27278 Plasmopara halstedii isolate 710 mitochondrion, complete genome blastn 17245 172 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
9561209 9561209 PRJNA666695_S_NODE_54688_length_283_cov_3.900826_g53594_i0 PRJNA666695 54688 283 3.900826 11.03933758 Phytopythium vexans 907947 SAR_Eukaryotes SAR_Eukaryotes 84.2 9.26e-12   NTclustered gi|2248513842|ref|NC_063815.1| 907947 g53594 i0 100 1.32155477031802 45 0 16 0 14 58 26962 26918 Phytopythium vexans culture CBS:119.80 mitochondrion, complete genome blastn 374 84.2 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Phytopythium Phytopythium vexans
9561499 9561499 PRJNA666695_S_NODE_67048_length_261_cov_2.840909_g65954_i0 PRJNA666695 67048 261 2.840909 7.41477249 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.024   NTclustered gi|813143459|ref|XM_012344285.1| 695850 g65954 i0 100 0.10727969348659 28 0 11 0 234 261 2315 2288 Saprolegnia parasitica CBS 223.65 V-type H(+)-translocating pyrophosphatase mRNA blastn 28 52.8 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
10834667 10834667 PRJNA666695_S_NODE_129689_length_192_cov_5.907285_g128595_i0 PRJNA666695 129689 192 5.907285 11.3419872 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 134 5.740000000000001e-27   NTclustered gi|813142527|ref|XM_012343931.1| 695850 g128595 i0 84.962 0.692708333333333 133 18 69 2 14 145 632 501 Saprolegnia parasitica CBS 223.65 60S ribosomal protein L3 mRNA blastn 133 134 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
10837126 10837126 PRJNA666695_S_NODE_68049_length_259_cov_10.339450_g66955_i0 PRJNA666695 68049 259 10.33945 26.7791755 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 91.6 5e-14   NTclustered gi|675185160|ref|XM_008903217.1| 761204 g66955 i0 88.312 0.575289575289575 77 8 29 1 184 259 648 572 Phytophthora parasitica INRA-310 ubiquitin-conjugating enzyme E2-16 kDa mRNA blastn 149 91.6 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
11366085 11366085 PRJNA666695_S_NODE_143189_length_182_cov_2.702128_g142095_i0 PRJNA666695 143189 182 2.702128 4.91787296 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 169 1.4699999999999998e-37   NTclustered gi|93139337|gb|DQ361214.1| 127443 g142095 i0 85.976 76 164 16 88 6 1 161 523 682 Phytophthora richardiae strain MG 42-2 NADH dehydrogenase subunit 1 (ND1) gene, partial cds; mitochondrial blastn 13832 169 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora richardiae
12112062 12112062 PRJNA666695_S_NODE_58850_length_275_cov_3.572650_g57756_i0 PRJNA666695 58850 275 3.57265 9.8247875 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 200 8.529999999999998e-47   NTclustered gi|695388802|ref|XM_009520976.1| 67593 g57756 i0 80.377 19.1636363636364 265 50 96 2 3 266 473 736 Phytophthora sojae hypothetical protein partial mRNA blastn 5270 200 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
14659515 14659515 PRJNA666695_S_NODE_13092_length_489_cov_29.131696_g12010_i0 PRJNA666695 13092 489 29.131696 142.45399344 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 191 9.69e-44   NTclustered gi|813198778|ref|XM_012353582.1| 695850 g12010 i0 84.694 2.31288343558282 196 24 39 5 19 211 315 123 Saprolegnia parasitica CBS 223.65 autophagy-like protein 8 mRNA blastn 1131 191 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
15934576 15934576 PRJNA666695_S_NODE_189553_length_153_cov_2.464286_g188459_i0 PRJNA666695 189553 153 2.464286 3.77035758 Phytophthora versiformis 1833877 SAR_Eukaryotes SAR_Eukaryotes 95.3 2.05e-15   NTclustered gi|2248513601|ref|NC_063809.1| 1833877 g188459 i0 87.059 36.4052287581699 85 9 55 2 65 148 29130 29213 Phytophthora versiformis isolate ST_20190930 mitochondrion, complete genome blastn 5570 95.3 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora versiformis
18482594 18482594 PRJNA666695_S_NODE_113115_length_207_cov_1.512048_g112021_i0 PRJNA666695 113115 207 1.512048 3.12993936 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 93.5 1.07e-14   NTclustered gi|673039884|ref|XM_008875681.1| 157072 g112021 i0 87.654 0.782608695652174 81 8 39 2 1 80 380 459 Aphanomyces invadans 60S ribosomal protein mRNA blastn 162 93.5 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
18482643 18482643 PRJNA666695_S_NODE_115635_length_204_cov_3.785276_g114541_i0 PRJNA666695 115635 204 3.785276 7.72196304 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 189 1.2999999999999996e-43   NTclustered gi|698802469|ref|XM_009835962.1| 112090 g114541 i0 83.333 65.25 204 34 100 0 1 204 730 933 Aphanomyces astaci V-type H(+)-translocating pyrophosphatase mRNA blastn 13311 189 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
18482977 18482977 PRJNA666695_S_NODE_131155_length_191_cov_3.066667_g130061_i0 PRJNA666695 131155 191 3.066667 5.85733397 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 95.3 2.69e-15   NTclustered gi|675165376|ref|XM_008893325.1| 761204 g130061 i0 93.75 24.7068062827225 64 2 33 2 128 190 700 638 Phytophthora parasitica INRA-310 hypothetical protein mRNA blastn 4719 95.3 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
22309439 22309439 PRJNA666695_S_NODE_31278_length_351_cov_4.809677_g30184_i0 PRJNA666695 31278 351 4.809677 16.88196627 Achlya klebsiana 4767 SAR_Eukaryotes SAR_Eukaryotes 294 4.99e-75   NTclustered gi|166301|gb|J05597.1|ACKBTUB 4767 g30184 i0 86.397 73.1481481481482 272 33 77 2 78 346 1542 1272 A.klebsiana beta-tubulin gene, complete cds blastn 25675 294 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya klebsiana
22840786 22840786 PRJNA666695_S_NODE_95058_length_225_cov_1.940217_g93964_i0 PRJNA666695 95058 225 1.940217 4.36548825 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 171 5.29e-38   NTclustered gi|2795036376|ref|XM_067936376.1| 4785 g93964 i0 81.773 84.5111111111111 203 37 90 0 21 223 190 392 Phytophthora cinnamomi 40S ribosomal protein S16 (IUM83_11796), partial mRNA blastn 19015 171 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;