RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA666695" and tax_phylum = "Nitrososphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrososphaerota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA666695 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1906896 1906896 PRJNA666695_S_NODE_140842_length_184_cov_1.930070_g139748_i0 PRJNA666695 140842 184 1.93007 3.5513288 uncultured marine thaumarchaeote KM3_54_G11 1456193 Archaea Archaea 54.7 0.004   NTclustered gi|663521873|gb|KF900939.1| 1456193 g139748 i0 100 0.157608695652174 29 0 16 0 24 52 23294 23266 Uncultured marine thaumarchaeote KM3_54_G11 genomic sequence blastn 29 54.7 1 Archaea   Thermoproteati Nitrososphaerota         uncultured marine thaumarchaeote KM3_54_G11
2438645 2438645 PRJNA666695_S_NODE_98202_length_221_cov_4.600000_g97108_i0 PRJNA666695 98202 221 4.6 10.166 Nitrosopumilus 338191 Archaea Archaea 52.8 0.02   NTclustered gi|1869221159|gb|CP026993.1| 1470066 g97108 i0 100 0.253393665158371 28 0 13 0 6 33 1421357 1421330 Nitrosopumilus cobalaminigenes strain HCA1 chromosome, complete genome blastn 56 52.8 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Nitrosopumilus cobalaminigenes
10836930 10836930 PRJNA666695_S_NODE_59589_length_274_cov_2.364807_g58495_i0 PRJNA666695 59589 274 2.364807 6.47957118 Candidatus Nitrosopumilus sp. SW 2508726 Archaea Archaea 52.8 0.025   NTclustered gi|1699461107|gb|CP035425.1| 2508726 g58495 i0 100 0.102189781021898 28 0 10 0 58 85 729328 729301 Candidatus Nitrosopumilus sp. SW chromosome, complete genome blastn 28 52.8 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Candidatus Nitrosopumilus sp. SW

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;