contig_metadata
8 rows where analysis = "blastn", bioproject = "PRJNA666695" and tax_phylum = "Myxococcota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2437984 | 2437984 | PRJNA666695_S_NODE_175102_length_161_cov_3.500000_g174008_i0 | PRJNA666695 | 175102 | 161 | 3.5 | 5.635 | Archangium | 47 | Bacteria | Bacteria | 126 | 7.77e-25 | NTclustered | gi|2579687829|gb|CP043494.1| | 83450 | g174008 | i0 | 80.864 | 3.03105590062112 | 162 | 29 | 100 | 2 | 1 | 161 | 4508327 | 4508487 | Archangium minus strain Cbm 6 chromosome, complete genome | blastn | 488 | 126 | 1 | Bacteria | Pseudomonadati | Myxococcota | Myxococcia | Myxococcales | Archangiaceae | Archangium | Archangium minus | ||
| 4991025 | 4991025 | PRJNA666695_S_NODE_169004_length_165_cov_1.854839_g167910_i0 | PRJNA666695 | 169004 | 165 | 1.854839 | 3.06048435 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 86.1 | 1.36e-12 | NTclustered | gi|2318731907|gb|CP104804.1| | 34 | g167910 | i0 | 83.333 | 9.61818181818182 | 96 | 12 | 57 | 3 | 63 | 156 | 8779418 | 8779511 | Myxococcus xanthus strain DK1050 chromosome | blastn | 1587 | 86.1 | 1 | Bacteria | Pseudomonadati | Myxococcota | Myxococcia | Myxococcales | Myxococcaceae | Myxococcus | Myxococcus xanthus | ||
| 13385667 | 13385667 | PRJNA666695_S_NODE_187671_length_154_cov_2.442478_g186577_i0 | PRJNA666695 | 187671 | 154 | 2.442478 | 3.76141612 | Sorangium cellulosum | 56 | Bacteria | Bacteria | 52.8 | 0.013 | NTclustered | gi|1566495190|gb|CP012670.1| | 56 | g186577 | i0 | 94.286 | 0.227272727272727 | 35 | 1 | 23 | 1 | 25 | 59 | 7313458 | 7313425 | Sorangium cellulosum strain So ceGT47 chromosome, complete genome | blastn | 35 | 52.8 | 1 | Bacteria | Pseudomonadati | Myxococcota | Polyangiales | Polyangiaceae | Sorangium | Sorangium cellulosum | |||
| 15933129 | 15933129 | PRJNA666695_S_NODE_115633_length_204_cov_3.803681_g114539_i0 | PRJNA666695 | 115633 | 204 | 3.803681 | 7.75950924 | uncultured Sorangium sp. | 491148 | Bacteria | Bacteria | 204 | 4.6399999999999994e-48 | NTclustered | gi|310755296|gb|HQ213186.1| | 491148 | g114539 | i0 | 96 | 115.28431372549 | 125 | 5 | 61 | 0 | 36 | 160 | 1105 | 1229 | Uncultured Sorangium sp. clone 3_E21 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | blastn | 23518 | 204 | 1 | Bacteria | Pseudomonadati | Myxococcota | Polyangiales | Polyangiaceae | Sorangium | uncultured Sorangium sp. | |||
| 19014918 | 19014918 | PRJNA666695_S_NODE_81215_length_241_cov_2.905000_g80121_i0 | PRJNA666695 | 81215 | 241 | 2.905 | 7.00105 | Pendulispora | 3375062 | Bacteria | Bacteria | 387 | 5.24e-103 | NTclustered | gi|2698045512|gb|CP089929.1| | 2741070 | g80121 | i0 | 96.186 | 156.381742738589 | 236 | 9 | 98 | 0 | 1 | 236 | 9852115 | 9851880 | Pendulispora rubella strain MSr11368 chromosome, complete genome | blastn | 37688 | 388 | 0.997422680412371 | Bacteria | Pseudomonadati | Myxococcota | Myxococcia | Myxococcales | Pendulisporaceae | Pendulispora | Pendulispora rubella | ||
| 22309358 | 22309358 | PRJNA666695_S_NODE_27758_length_367_cov_2.279141_g26665_i0 | PRJNA666695 | 27758 | 367 | 2.279141 | 8.36444747 | Haliangium ochraceum | 80816 | Bacteria | Bacteria | 58.4 | 7.49e-4 | NTclustered | gi|262076673|gb|CP001804.1| | 502025 | g26665 | i0 | 92.5 | 0.26158038147139 | 40 | 3 | 11 | 0 | 159 | 198 | 2356178 | 2356217 | Haliangium ochraceum DSM 14365, complete genome | blastn | 96 | 58.4 | 1 | Bacteria | Pseudomonadati | Myxococcota | Haliangiales | Kofleriaceae | Haliangium | Haliangium ochraceum | |||
| 23582661 | 23582661 | PRJNA666695_S_NODE_103219_length_216_cov_2.891429_g102125_i0 | PRJNA666695 | 103219 | 216 | 2.891429 | 6.24548664 | Anaeromyxobacter dehalogenans | 161493 | Bacteria | Bacteria | 54.7 | 0.005 | NTclustered | gi|219952977|gb|CP001359.1| | 455488 | g102125 | i0 | 100 | 0.912037037037037 | 29 | 0 | 13 | 0 | 118 | 146 | 4312867 | 4312895 | Anaeromyxobacter dehalogenans 2CP-1 chromosome, complete genome | blastn | 197 | 54.7 | 1 | Bacteria | Pseudomonadati | Myxococcota | Myxococcia | Myxococcales | Anaeromyxobacteraceae | Anaeromyxobacter | Anaeromyxobacter dehalogenans | ||
| 23585773 | 23585773 | PRJNA666695_S_NODE_68739_length_258_cov_7.953917_g67645_i0 | PRJNA666695 | 68739 | 258 | 7.953917 | 20.52110586 | Nannocystis punicea | 2995304 | Bacteria | Bacteria | 73.1 | 1.8e-8 | NTclustered | gi|2415023655|gb|CP114040.1| | 2995304 | g67645 | i0 | 93.75 | 0.383720930232558 | 48 | 3 | 19 | 0 | 66 | 113 | 11313743 | 11313696 | Nannocystis poenicansa strain FL3 chromosome, complete genome | blastn | 99 | 73.1 | 1 | Bacteria | Pseudomonadati | Myxococcota | Nannocystales | Nannocystaceae | Nannocystis | Nannocystis punicea |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;