RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA666695" and tax_phylum = "Foraminifera"

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tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA666695 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5736031 5736031 PRJNA666695_S_NODE_49925_length_294_cov_1.454545_g48831_i0 PRJNA666695 49925 294 1.454545 4.2763623 Tretomphalus sp. B123 313591 SAR_Eukaryotes SAR_Eukaryotes 80.5 1.25e-10   NTclustered gi|59859639|gb|AY764005.1| 313591 g48831 i0 85.714 3.60204081632653 77 9 26 2 215 290 1194 1119 Tretomphalus sp. B123 clone nTRE1 actin type 2 gene, partial cds blastn 1059 80.5 1 Eukaryota Sar   Foraminifera   Rotaliida Rosalinidae Tretomphalus Tretomphalus sp. B123
14661445 14661445 PRJNA666695_S_NODE_46052_length_303_cov_3.160305_g44958_i0 PRJNA666695 46052 303 3.160305 9.57572415 Miliolidae sp. isolate 3955 313610 SAR_Eukaryotes SAR_Eukaryotes 279 1.19e-70   NTclustered gi|59859609|gb|AY763990.1| 313610 g44958 i0 86.328 47.4950495049505 256 35 84 0 36 291 309 564 Miliolidae sp. isolate 3955 clone MilA526_9 actin type 2 gene, partial cds blastn 14391 279 1 Eukaryota Sar   Foraminifera   Miliolida Miliolidae   Miliolidae sp. isolate 3955

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;