RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA666695" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA666695 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8285982 8285982 PRJNA666695_S_NODE_56627_length_279_cov_5.647059_g55533_i0 PRJNA666695 56627 279 5.647059 15.75529461 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 220 6.66e-53   NTclustered gi|470455615|ref|XM_004340928.1| 1257118 g55533 i0 82.857 7.27956989247312 245 42 88 0 1 245 172 416 Acanthamoeba castellanii str. Neff ribosomal protein S23 (S12), putative (ACA1_232480), partial mRNA blastn 2031 220 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
13917008 13917008 PRJNA666695_S_NODE_42491_length_312_cov_8.630996_g41397_i0 PRJNA666695 42491 312 8.630996 26.92870752 Vannella 95228 Discosea other_Eukaryota 549 8.489999999999997e-152   NTclustered gi|399764213|gb|JQ271724.1| 1215628 g41397 i0 98.403 91.4038461538462 313 4 100 1 1 312 1575 1887 Vannella sp. ACN1 18S ribosomal RNA gene, partial sequence blastn 28518 549 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. ACN1
14661108 14661108 PRJNA666695_S_NODE_32412_length_346_cov_6.380328_g31318_i0 PRJNA666695 32412 346 6.3803280000000004 22.07593488 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 111 5.33e-20   NTclustered gi|470459156|ref|XM_004341277.1| 1257118 g31318 i0 92.308 5.76589595375723 78 6 23 0 201 278 1166 1089 Acanthamoeba castellanii str. Neff ribosomal protein L3, putative (ACA1_264110), partial mRNA blastn 1995 111 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
15933255 15933255 PRJNA666695_S_NODE_12213_length_503_cov_23.010823_g11138_i0 PRJNA666695 12213 503 23.010823 115.74443969 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 219 4.5799999999999996e-52   NTclustered gi|470441552|ref|XM_004339378.1| 1257118 g11138 i0 79.612 9.60834990059642 309 59 61 4 195 501 522 216 Acanthamoeba castellanii str. Neff ribosomal protein L10, putative (ACA1_061530), partial mRNA blastn 4833 219 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
17210130 17210130 PRJNA666695_S_NODE_3114_length_889_cov_179.956368_g2466_i0 PRJNA666695 3114 889 179.956368 1599.81211152 Vannella ebro 207334 Discosea other_Eukaryota 737 0   NTclustered gi|33946344|gb|AY294151.1| 207334 g2466 i0 82.299 97.6332958380202 870 136 97 16 29 889 1137 277 Vannella ebro actin mRNA, complete cds blastn 86796 737 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella ebro
19760294 19760294 PRJNA666695_S_NODE_84936_length_236_cov_5.194872_g83842_i0 PRJNA666695 84936 236 5.194872 12.25989792 Vannella sp. 1973054 Discosea other_Eukaryota 372 1.43e-98   NTclustered gi|2169663314|gb|OL989990.1| 1973054 g83842 i0 98.104 79.3177966101695 211 4 89 0 26 236 123 333 Vannella sp. isolate P147 small subunit ribosomal RNA gene, partial sequence blastn 18719 372 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;