RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA666695" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA666695 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10834538 10834538 PRJNA666695_S_NODE_123389_length_198_cov_1.171975_g122295_i0 PRJNA666695 123389 198 1.171975 2.3205105 Chloroflexota bacterium 2026724 Bacteria Bacteria 52.8 0.017   NTclustered gi|2893358434|emb|OZ220726.1| 2026724 g122295 i0 100 0.141414141414141 28 0 14 0 54 81 1178627 1178654 MAG: Chloroflexota bacterium isolate 6b50408d-bb21-410b-bf53-c761b53f873e genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
10836492 10836492 PRJNA666695_S_NODE_40809_length_317_cov_4.833333_g39715_i0 PRJNA666695 40809 317 4.833333 15.32166561 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 58.4 6.38e-4   NTclustered gi|2893358456|emb|OZ220748.1| 2026734 g39715 i0 94.595 0.116719242902208 37 2 12 0 244 280 1392940 1392976 MAG: Dehalococcoidia bacterium isolate 6c7b36c8-b3ab-4b4c-a352-7e98d29eb5d7 genome assembly, chromosome: 1 blastn 37 58.4 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;