RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA666695" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 8 ✖

bioproject 1

  • PRJNA666695 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9558639 9558639 PRJNA666695_S_NODE_109428_length_210_cov_2.893491_g108334_i0 PRJNA666695 109428 210 2.893491 6.0763311 Halovivax cerinus 1487865 Archaea Archaea 52.8 0.018   NTclustered gi|2279709464|gb|CP101824.1| 1487865 g108334 i0 100 0.133333333333333 28 0 13 0 85 112 1011203 1011176 Halovivax cerinus strain IBRC-M 10256 chromosome, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Halovivax Halovivax cerinus
13385779 13385779 PRJNA666695_S_NODE_194451_length_151_cov_1.254545_g193357_i0 PRJNA666695 194451 151 1.254545 1.89436295 Methanosarcina horonobensis 418008 Archaea Archaea 52.8 0.012   NTclustered gi|805380606|gb|CP009516.1| 1434110 g193357 i0 100 0.185430463576159 28 0 19 0 5 32 1136081 1136054 Methanosarcina horonobensis HB-1, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina horonobensis
17208288 17208288 PRJNA666695_S_NODE_115874_length_204_cov_2.619632_g114780_i0 PRJNA666695 115874 204 2.619632 5.34404928 Methanocaldococcus vulcanius 73913 Archaea Archaea 54.7 0.005   NTclustered gi|261369124|gb|CP001787.1| 579137 g114780 i0 100 0.142156862745098 29 0 14 0 33 61 776243 776271 Methanocaldococcus vulcanius M7, complete genome blastn 29 54.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus vulcanius
18482556 18482556 PRJNA666695_S_NODE_110935_length_209_cov_1.642857_g109841_i0 PRJNA666695 110935 209 1.642857 3.43357113 Halosegnis marinus 3034023 Archaea Archaea 58.4 3.94e-4   NTclustered gi|2463595543|gb|CP119802.1| 3034023 g109841 i0 97.059 0.478468899521531 34 1 16 0 159 192 1521883 1521850 Halosegnis marinus strain DT85 chromosome, complete genome blastn 100 58.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Halosegnis Halosegnis marinus
18484908 18484908 PRJNA666695_S_NODE_47595_length_299_cov_3.468992_g46501_i0 PRJNA666695 47595 299 3.468992 10.37228608 Methanobrevibacter arboriphilus 39441 Archaea Archaea 58.4 5.98e-4   NTclustered gi|2047640843|dbj|AP019779.1| 39441 g46501 i0 97.059 0.11371237458194 34 1 11 0 119 152 1776465 1776432 Methanobrevibacter arboriphilus SA DNA, complete genome blastn 34 58.4 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter arboriphilus
19756997 19756997 PRJNA666695_S_NODE_106756_length_213_cov_1.604651_g105662_i0 PRJNA666695 106756 213 1.604651 3.41790663 Methanothrix sp. 90426 Archaea Archaea 58.4 4.03e-4   NTclustered gi|2621703957|emb|OY762912.1| 90426 g105662 i0 100 0.145539906103286 31 0 15 0 81 111 2545606 2545636 MAG: Methanothrix sp. isolate 80880379-7421-4bc7-b5fd-f9f5169ec620 genome assembly, chromosome: 1 blastn 31 58.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.
21035695 21035695 PRJNA666695_S_NODE_76317_length_248_cov_1.555556_g75223_i0 PRJNA666695 76317 248 1.555556 3.85777888 Haloprofundus halobius 2876194 Archaea Archaea 56.5 0.002   NTclustered gi|2099489103|gb|CP083666.1| 2876194 g75223 i0 100 0.120967741935484 30 0 12 0 145 174 2092621 2092592 Haloprofundus halobius strain SEDH52 chromosome, complete genome blastn 30 56.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloprofundus Haloprofundus halobius
24858770 24858770 PRJNA666695_S_NODE_48080_length_298_cov_2.684825_g46986_i0 PRJNA666695 48080 298 2.684825 8.0007785 Haloglomus salinum 2962673 Archaea Archaea 52.8 0.028   NTclustered gi|2273560668|gb|CP101153.1| 2962673 g46986 i0 100 0.0939597315436242 28 0 9 0 36 63 61559 61586 Haloglomus salinum strain ZY58 chromosome, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Haloglomus Haloglomus salinum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;