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contig_metadata

16 rows where analysis = "blastn", bioproject = "PRJNA666695" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 16 ✖

bioproject 1

  • PRJNA666695 · 16 ✖

analysis 1

  • blastn · 16 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
630821 630821 PRJNA666695_S_NODE_141301_length_184_cov_1.286713_g140207_i0 PRJNA666695 141301 184 1.286713 2.36755192 Monoraphidium neglectum 145388 Plants Plants 106 1.19e-18   NTclustered gi|926785511|ref|XM_014045776.1| 145388 g140207 i0 78.75 1.3804347826087 160 33 87 1 9 168 507 349 Monoraphidium neglectum 60S acidic ribosomal protein P0 mRNA blastn 254 106 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
3182693 3182693 PRJNA666695_S_NODE_19403_length_419_cov_8.611111_g18311_i0 PRJNA666695 19403 419 8.611111 36.08055509 Polytomella sp. Pringsheim 198.80 37502 Plants Plants 169 3.8399999999999995e-37   NTclustered gi|402244316|emb|FR686759.1| 37502 g18311 i0 81.683 2.06443914081146 202 37 48 0 218 419 1159 958 Polytomella sp. Pringsheim 198.80 mRNA for 40S ribosomal protein L3 (rpl3 gene) blastn 865 169 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Polytomella Polytomella sp. Pringsheim 198.80
5734387 5734387 PRJNA666695_S_NODE_147505_length_179_cov_2.333333_g146411_i0 PRJNA666695 147505 179 2.333333 4.17666607 Monoraphidium neglectum 145388 Plants Plants 52.8 0.015   NTclustered gi|926777441|ref|XM_014041741.1| 145388 g146411 i0 100 0.156424581005587 28 0 16 0 24 51 1969 1996 Monoraphidium neglectum serine/threonine-protein kinase TTK/MPS1 mRNA blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
10837630 10837630 PRJNA666695_S_NODE_91249_length_229_cov_2.590426_g90155_i0 PRJNA666695 91249 229 2.590426 5.93207554 Auxenochlorella protothecoides 3075 Plants Plants 198 2.48e-46   NTclustered gi|760442584|ref|XM_011400059.1| 3075 g90155 i0 86.264 83.2270742358079 182 25 79 0 48 229 618 437 Auxenochlorella protothecoides NADH dehydrogenase [ubiquinone] iron-sulfur protein 8-A, mitochondrial partial mRNA blastn 19059 198 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
11366883 11366883 PRJNA666695_S_NODE_94449_length_225_cov_16.570652_g93355_i0 PRJNA666695 94449 225 16.570652 37.283967 Eukaryota 2759 Plants Plants 198 2.43e-46   NTclustered gi|806787493|gb|KM233167.1| 3088 g93355 i0 99.091 49.0266666666667 110 1 49 0 16 125 441 550 Acutodesmus obliquus strain VRUC280 18S ribosomal RNA gene, partial sequence blastn 11031 198 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus
12111578 12111578 PRJNA666695_S_NODE_38370_length_325_cov_2.672535_g37276_i0 PRJNA666695 38370 325 2.672535 8.68573875 Lobosphaera incisa 312850 Plants Plants 52.8 0.031   NTclustered gi|725650896|ref|NC_025533.1| 312850 g37276 i0 100 0.0861538461538462 28 0 9 0 115 142 40386 40359 Lobosphaera incisa culture-collection SAG:2007 chloroplast, complete genome blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Lobosphaera Lobosphaera incisa
13385221 13385221 PRJNA666695_S_NODE_16411_length_447_cov_25.975369_g15320_i0 PRJNA666695 16411 447 25.975369 116.10989943 Chlamydomonas reinhardtii 3055 Plants Plants 106 3.28e-18   NTclustered gi|2082260798|ref|XM_001697008.2| 3055 g15320 i0 92 1.30425055928412 75 6 17 0 223 297 957 1031 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_12g520500v5), mRNA blastn 583 106 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
13916566 13916566 PRJNA666695_S_NODE_1411_length_1267_cov_22.891517_g986_i0 PRJNA666695 1411 1267 22.891517 290.03552039 Trebouxiophyceae 75966 Plants Plants 63.9 5.98e-5   NTclustered gi|371782132|emb|HE610164.1| 33092 g986 i0 95 4.87371744277822 40 2 3 0 399 438 37 76 Koliella longiseta plastid partial 23S rRNA gene, strain SAG 470-1 blastn 6175 63.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella longiseta
18485107 18485107 PRJNA666695_S_NODE_5575_length_691_cov_60.810769_g2466_i1 PRJNA666695 5575 691 60.810769 420.20241379 Valonia macrophysa 432605 Plants Plants 527 9.399999999999999e-145   NTclustered gi|969822378|gb|KT950956.1| 432605 g2466 i1 82.212 84.9001447178003 624 99 89 9 1 618 262 879 Valonia macrophysa isolate 1528 actin gene, partial cds blastn 58666 527 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Cladophorales Valoniaceae Valonia Valonia macrophysa
19758740 19758740 PRJNA666695_S_NODE_20696_length_409_cov_11.586957_g19603_i0 PRJNA666695 20696 409 11.586957 47.39065413 Coccomyxa subellipsoidea 248742 Plants Plants 145 6.3000000000000005e-30   NTclustered gi|545374542|ref|XM_005651492.1| 574566 g19603 i0 80.198 45.1002444987775 202 32 48 8 6 203 134 331 Coccomyxa subellipsoidea C-169 hypothetical protein mRNA blastn 18446 145 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
19760283 19760283 PRJNA666695_S_NODE_84516_length_237_cov_2.346939_g83422_i0 PRJNA666695 84516 237 2.346939 5.56224543 Chlamydomonas reinhardtii 3055 Plants Plants 52.8 0.021   NTclustered gi|2082240264|ref|XM_043060006.1| 3055 g83422 i0 92.105 0.160337552742616 38 2 16 1 22 58 2523 2560 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_02g117900v5), mRNA blastn 38 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
21565165 21565165 PRJNA666695_S_NODE_54577_length_283_cov_7.983471_g53483_i0 PRJNA666695 54577 283 7.983471 22.59322293 Eukaryota 2759 Plants Plants 58.4 5.61e-4   NTclustered gi|441165|dbj|D13324.1|CHLSSU 3072 g53483 i0 100 12.8127208480565 31 0 11 0 253 283 99 129 'Chlorella' ellipsoidea gene for small subunit rRNA, partial sequence blastn 3626 58.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Pseudochlorella Pseudochlorella pringsheimii
23583003 23583003 PRJNA666695_S_NODE_11979_length_507_cov_13.903433_g10909_i0 PRJNA666695 11979 507 13.903433 70.49040531 Prototheca wickerhamii 3111 Plants Plants 161 7.9e-35   NTclustered gi|1929550831|gb|MN794237.1| 3111 g10909 i0 79.825 10.0512820512821 228 40 44 6 78 302 41803 42027 Prototheca wickerhamii strain DBVPG mitochondrion, complete genome blastn 5096 161 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii
24856212 24856212 PRJNA666695_S_NODE_102060_length_217_cov_3.801136_g100966_i0 PRJNA666695 102060 217 3.801136 8.24846512 Koliella sp. HS-2024a 3231931 Plants Plants 141 3.98e-29   NTclustered gi|2754686484|gb|PP990793.1| 3231931 g100966 i0 79.602 56.8709677419355 201 37 92 4 9 207 70462 70660 Koliella sp. HS-2024a strain FACHB-3607 chloroplast, complete genome blastn 12341 141 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella sp. HS-2024a
24859632 24859632 PRJNA666695_S_NODE_87100_length_234_cov_1.782383_g86006_i0 PRJNA666695 87100 234 1.782383 4.17077622 Chlamydomonas reinhardtii 3055 Plants Plants 122 1.5699999999999994e-23   NTclustered gi|2082235968|ref|XM_043058303.1| 3055 g86006 i0 89.796 0.837606837606838 98 6 41 3 136 231 2468 2373 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_01g011100v5), mRNA blastn 196 122 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
25389352 25389352 PRJNA666695_S_NODE_22080_length_399_cov_20.058659_g20987_i0 PRJNA666695 22080 399 20.058659 80.03404941 Chlorophyta 3041 Plants Plants 182 4.67e-41   NTclustered gi|635557420|emb|FN984965.1| 37502 g20987 i0 80.328 16.5989974937343 244 44 61 4 12 253 1213 1454 Polytomella sp. Pringsheim 198.80 mRNA for S-Adenosyl homocysteine hydrolase (sah1 gene) blastn 6623 183 0.994535519125683 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Polytomella Polytomella sp. Pringsheim 198.80

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;